BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0133.0008.p (182 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313167|ref|YP_003777259.1| amino acid ABC transporter perm... 214 3e-57 gi|300310828|ref|YP_003774920.1| amino acid ABC transporter perm... 214 4e-57 gi|300313888|ref|YP_003777980.1| amino acid ABC transporter perm... 204 5e-54 gi|300309584|ref|YP_003773676.1| amino acid ABC transporter perm... 184 3e-48 gi|300311471|ref|YP_003775563.1| amino acid ABC transporter perm... 110 6e-26 >gi|300313167|ref|YP_003777259.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 216 Score = 214 bits (545), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 98/181 (54%), Positives = 136/181 (75%) Query: 1 VLLFMRNSRYRILRDIIRVYIEVFQGTPLLMQLFLVFFGIALFGTEVSAWLAAGVALTLW 60 V+ R S +LR I YI+V QG PLL+ LF+ +FG+A+ G +++ +AAG++ ++ Sbjct: 36 VIALWRVSPNAVLRGIASGYIQVVQGIPLLVILFVAYFGLAIAGFKLTPLVAAGISFAIY 95 Query: 61 SASFLAEIWRGCVDAIPRGQWEASACLAMNRFQQMRYIVLPQALRVAIPPTVGFGVQIIK 120 A+FL EIWRGC+ A+P+ QWEAS CL NRF+Q+ ++LPQA+++A PPTVGF VQI+K Sbjct: 96 CAAFLGEIWRGCIQAVPKTQWEASECLGFNRFEQLTKVILPQAVKIATPPTVGFMVQIVK 155 Query: 121 GTAVTSIIGFVELSKAGTIITNATFQPFIVFGLVGLMYFVLCWPLSKYSQFLERKFNVAH 180 T++ S+IGFV+LS+AG II N+TFQPF VFG V L+YF LC+PLS S+ ERK NV+H Sbjct: 156 NTSLASVIGFVDLSRAGQIINNSTFQPFTVFGCVALIYFCLCFPLSALSKHFERKLNVSH 215 Query: 181 R 181 R Sbjct: 216 R 216 >gi|300310828|ref|YP_003774920.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 216 Score = 214 bits (545), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 97/181 (53%), Positives = 145/181 (80%), Gaps = 1/181 (0%) Query: 1 VLLFMRNSRYRILRDIIRVYIEVFQGTPLLMQLFLVFFGIALFGTEVSAWLAAGVALTLW 60 ++ MR S LR + VYI++ QGTP+L+ LFL F+G+A+FG ++ +AA +A+T++ Sbjct: 37 IVALMRTSHLAPLRLLSAVYIQIIQGTPVLILLFLSFYGLAIFGYKLPPMVAATIAMTIY 96 Query: 61 SASFLAEIWRGCVDAIPRGQWEASACLAMNRFQQMRYIVLPQALRVAIPPTVGFGVQIIK 120 S+++L EIWRGC++A+P QWEAS LAM R+QQ+RY++LPQA+R+++PPTVGF VQI+K Sbjct: 97 SSAYLGEIWRGCIEAVPVPQWEASTALAMTRWQQLRYVILPQAVRISLPPTVGFLVQIVK 156 Query: 121 GTAVTSIIGFVELSKAGTIITNATFQPFIVFGLVGLMYFVLCWPLSKYSQFLERKFNVAH 180 T++ SIIG VEL++AG +++NATFQPF+VF +V +YFV C+PLS+++ LERK++ AH Sbjct: 157 NTSIASIIGLVELAQAGKLVSNATFQPFLVFPIVAGIYFVFCYPLSRFAFALERKYH-AH 215 Query: 181 R 181 R Sbjct: 216 R 216 >gi|300313888|ref|YP_003777980.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 217 Score = 204 bits (518), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 92/181 (50%), Positives = 143/181 (79%) Query: 1 VLLFMRNSRYRILRDIIRVYIEVFQGTPLLMQLFLVFFGIALFGTEVSAWLAAGVALTLW 60 +++ R S + LR ++IE QG PLL+ LF+V+FG++++G + A +AAG+A+ ++ Sbjct: 37 LVMLARISPHAWLRRPAILFIECVQGIPLLILLFIVYFGLSVYGLVLPALVAAGLAMMIY 96 Query: 61 SASFLAEIWRGCVDAIPRGQWEASACLAMNRFQQMRYIVLPQALRVAIPPTVGFGVQIIK 120 ++++L +IWRGCV+A+PR QWEAS CL++ R+Q +R +++PQA R+++PPT+GF VQ+IK Sbjct: 97 TSAYLGDIWRGCVEAMPRPQWEASECLSLTRWQTLRLVIIPQATRLSLPPTIGFLVQLIK 156 Query: 121 GTAVTSIIGFVELSKAGTIITNATFQPFIVFGLVGLMYFVLCWPLSKYSQFLERKFNVAH 180 T++ S+IGFVEL++AG II N+ FQPF+VF LVG YF+LC+PLS++S +ERK NV+H Sbjct: 157 MTSLASVIGFVELTRAGQIINNSIFQPFLVFLLVGSFYFLLCYPLSRWSASMERKLNVSH 216 Query: 181 R 181 R Sbjct: 217 R 217 >gi|300309584|ref|YP_003773676.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 215 Score = 184 bits (467), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 90/179 (50%), Positives = 129/179 (72%), Gaps = 3/179 (1%) Query: 6 RNSRYRILRDIIRVYIEVFQGTPLLMQLFLVFFGIALFGT-EVSAWLAAGVALTLWSASF 64 R S R LR + +I++ QGTPLL+ + + F+G AL G V A AA A+ +++++F Sbjct: 38 RVSALRPLRRLAAAWIQLIQGTPLLVLMGVCFYGPALAGVGTVEALPAAATAMLIYTSAF 97 Query: 65 LAEIWRGCVDAIPRGQWEASACLAMNRFQQMRYIVLPQALRVAIPPTVGFGVQIIKGTAV 124 L EIWRGC+ ++ + QWEA+ C+ ++R+Q+MR IVLPQALR+A PPTVGF VQ+IK T+V Sbjct: 98 LGEIWRGCIQSVHKSQWEAAECIGLSRWQRMRMIVLPQALRMATPPTVGFAVQVIKNTSV 157 Query: 125 TS-IIGFVELSKAGTIITNATFQPFIVFGLVGLMYFVLCWPLSKYSQFLERKFNVAHRH 182 S +IGF ELS ++ N+TFQPF+ FG L+YF +C+PLS++S+ LERK + AHR Sbjct: 158 ASLVIGFAELSYNAKVLNNSTFQPFLYFGSAALLYFAMCYPLSRWSRALERKLH-AHRR 215 >gi|300311471|ref|YP_003775563.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 221 Score = 110 bits (275), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 54/163 (33%), Positives = 96/163 (58%) Query: 19 VYIEVFQGTPLLMQLFLVFFGIALFGTEVSAWLAAGVALTLWSASFLAEIWRGCVDAIPR 78 +Y+ + +GTPLL+Q+F+V++G+ G E S A + L+L ++++L+E RG + + R Sbjct: 58 IYVSMMRGTPLLVQIFVVYYGLPGMGIEFSPLTAGVLTLSLNASAYLSESLRGAILGVTR 117 Query: 79 GQWEASACLAMNRFQQMRYIVLPQALRVAIPPTVGFGVQIIKGTAVTSIIGFVELSKAGT 138 GQW A+ + + FQ +RYI++PQA+R+A+P + +IK T++ S+I EL A Sbjct: 118 GQWNAAFSVGLTYFQTLRYIIVPQAVRIAVPSMSNTLISLIKDTSLVSVITVTELMLATK 177 Query: 139 IITNATFQPFIVFGLVGLMYFVLCWPLSKYSQFLERKFNVAHR 181 + TF+P ++ +Y++L LE+K AH+ Sbjct: 178 EVIAVTFRPLPLYVAAAAIYWMLSLCFEALQHRLEKKLGKAHQ 220 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.333 0.144 0.456 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 545,344 Number of extensions: 20958 Number of successful extensions: 151 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 142 Number of HSP's successfully gapped: 19 Length of query: 182 Length of database: 1,619,870 Length adjustment: 80 Effective length of query: 102 Effective length of database: 1,241,070 Effective search space: 126589140 Effective search space used: 126589140 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.5 bits) S2: 127 (53.5 bits)