BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0133.0007.p (131 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporte... 184 2e-48 gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPa... 139 6e-35 gi|300309583|ref|YP_003773675.1| amino acid ABC transporter ATPa... 132 1e-32 gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPa... 128 2e-31 gi|300312808|ref|YP_003776900.1| glutamine ABC transporter ATPas... 118 2e-28 >gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 184 bits (467), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 92/128 (71%), Positives = 106/128 (82%) Query: 1 MSLIVIENVKKSYGNNAVLRGIDLEINAGEVIAIIGKSGSGKSTLLRCINGLETIDEGLI 60 M LI I+NVKK +G+N VL+GI L++ GEVIAIIGKSGSGKSTLLRCINGLE+IDEG I Sbjct: 1 MPLIAIDNVKKRFGDNEVLKGISLDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGNI 60 Query: 61 SVGDVLLGRSERELRELRLRVGMIFQQFNLFPHLSVGRNVMISPIIVKGAKEQQAREIAQ 120 SV LG SE ELR LRL+VGMIFQQFNLFPHLSVGRNVMI+P+IVKG E +A + A+ Sbjct: 61 SVAGAKLGASELELRNLRLKVGMIFQQFNLFPHLSVGRNVMIAPMIVKGVSEAEAMKTAK 120 Query: 121 QNLTRVGL 128 NL +VGL Sbjct: 121 ANLEKVGL 128 >gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 139 bits (351), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 70/128 (54%), Positives = 89/128 (69%) Query: 1 MSLIVIENVKKSYGNNAVLRGIDLEINAGEVIAIIGKSGSGKSTLLRCINGLETIDEGLI 60 M ++ I N+ K +G+N VL GI L + G+V+AIIG+SGSGKST+LRCINGLETID G I Sbjct: 1 MPIVEINNITKRFGSNQVLNGISLSVERGQVVAIIGRSGSGKSTMLRCINGLETIDGGSI 60 Query: 61 SVGDVLLGRSERELRELRLRVGMIFQQFNLFPHLSVGRNVMISPIIVKGAKEQQAREIAQ 120 +V L L ELR VGM+FQ +NLFPHL+V N+M+SP IVK + ARE A Sbjct: 61 TVAGHKLTHKHEHLIELRKDVGMVFQHYNLFPHLTVEENIMLSPRIVKKTATETARETAI 120 Query: 121 QNLTRVGL 128 + L +VGL Sbjct: 121 KVLKQVGL 128 >gi|300309583|ref|YP_003773675.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 132 bits (331), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 67/129 (51%), Positives = 90/129 (69%) Query: 2 SLIVIENVKKSYGNNAVLRGIDLEINAGEVIAIIGKSGSGKSTLLRCINGLETIDEGLIS 61 +++ ++ V K +G+N VLRG+ ++ GEV+AIIGKSGSGKST LRCIN LE ID G IS Sbjct: 3 TVVELQGVHKRFGSNTVLRGVSFQVARGEVVAIIGKSGSGKSTALRCINRLEQIDAGQIS 62 Query: 62 VGDVLLGRSERELRELRLRVGMIFQQFNLFPHLSVGRNVMISPIIVKGAKEQQAREIAQQ 121 V L + +LR LR VG++FQ +NLFPHL+V +N+ + P VK QA+ +AQQ Sbjct: 63 VCGHALHAAGLDLRGLRRDVGIVFQGYNLFPHLTVLQNITLGPTAVKRMPADQAQTLAQQ 122 Query: 122 NLTRVGLAE 130 L RVGLA+ Sbjct: 123 VLARVGLAD 131 >gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 128 bits (321), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 66/130 (50%), Positives = 93/130 (71%), Gaps = 2/130 (1%) Query: 1 MSLIV-IENVKKSYGNNAVLRGIDLEINAGEVIAIIGKSGSGKSTLLRCINGLETIDEGL 59 MS IV I+++ KS+G+N VL G+ L++ G+++AIIGKSGSGKSTLLRC+NGLE +D G Sbjct: 1 MSAIVKIKDLHKSFGSNKVLNGVSLDVQKGQMVAIIGKSGSGKSTLLRCLNGLEKVDAGD 60 Query: 60 ISV-GDVLLGRSERELRELRLRVGMIFQQFNLFPHLSVGRNVMISPIIVKGAKEQQAREI 118 I V G + + LRELR +VG++FQ +NLFPHL+V RN+ ++ +K +QA+ I Sbjct: 61 IQVCGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTEQAKTI 120 Query: 119 AQQNLTRVGL 128 A + L VGL Sbjct: 121 AHKVLQLVGL 130 >gi|300312808|ref|YP_003776900.1| glutamine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 240 Score = 118 bits (295), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 61/128 (47%), Positives = 83/128 (64%) Query: 3 LIVIENVKKSYGNNAVLRGIDLEINAGEVIAIIGKSGSGKSTLLRCINGLETIDEGLISV 62 ++ ++V K +G+N VL GI+L I GEV+ +IG SGSGKSTLLRCIN LE ID G + V Sbjct: 1 MVEFKSVSKRFGSNVVLDGINLTIRKGEVVVLIGPSGSGKSTLLRCINALEEIDGGDLLV 60 Query: 63 GDVLLGRSERELRELRLRVGMIFQQFNLFPHLSVGRNVMISPIIVKGAKEQQAREIAQQN 122 + + +R +R GM+FQQFNLFP L+ NV P V+GA ++A +A + Sbjct: 61 DGISVLSGSSSVRAIRQEAGMVFQQFNLFPQLTALENVAFGPRHVRGASSEEANALASEL 120 Query: 123 LTRVGLAE 130 L +VGLAE Sbjct: 121 LAKVGLAE 128 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.139 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 315,160 Number of extensions: 10123 Number of successful extensions: 286 Number of sequences better than 1.0e-08: 87 Number of HSP's gapped: 246 Number of HSP's successfully gapped: 87 Length of query: 131 Length of database: 1,619,870 Length adjustment: 75 Effective length of query: 56 Effective length of database: 1,264,745 Effective search space: 70825720 Effective search space used: 70825720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 125 (52.8 bits)