BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0133.0005.p (308 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 344 5e-96 gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sen... 343 1e-95 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 332 2e-92 gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis tra... 328 2e-91 gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis pro... 325 4e-90 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 344 bits (882), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 200/294 (68%), Positives = 236/294 (80%), Gaps = 9/294 (3%) Query: 1 LLMSLQAMNTNLRNIVNNVRTGTVTIATASREIAAGNMDLSSRTESQASALEETASAMEG 60 LL SL+ MN +LR IV+NVR+GT TI+TAS EIAAGN+DLSSRTE QAS+L ETASAME Sbjct: 249 LLQSLKDMNQSLRGIVSNVRSGTDTISTASSEIAAGNLDLSSRTEQQASSLAETASAMEE 308 Query: 61 LISTVRSNADNAREASELASSASSIAIEGGNAVDDMVQTMGEINASSKKIVDIISVIDGI 120 LISTVR NADNAR+AS+LA+SAS++A +GG V +V TMG INASS+KIVDIISVIDGI Sbjct: 309 LISTVRQNADNARQASQLANSASAVAEQGGGVVSQVVDTMGAINASSRKIVDIISVIDGI 368 Query: 121 AFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKALIDDSVKRVSNG 180 AFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AAKEIK LI+DSV +V +G Sbjct: 369 AFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELINDSVGKVDDG 428 Query: 181 SMQVERAGATMANVVTSVKRVTSIVHEISEASQEQAEGIEQVNDTVTQLDHVTQKNAALV 240 S VE+AG TM VV+SV+RVT IV EIS AS EQ GIEQ+N +TQ+D VTQ+NAALV Sbjct: 429 SRLVEQAGNTMQEVVSSVRRVTDIVAEISAASTEQTHGIEQINLAITQMDQVTQQNAALV 488 Query: 241 EEAASAADAMQQQAANLAKLVSVF-ITDSSALVADSNVAASHVATTASPASPAL 293 EEAA+AA +MQ QA L ++VSVF +++ LV +P+SP L Sbjct: 489 EEAAAAAASMQTQAGRLMQMVSVFRLSEREPLV--------RREIDVTPSSPVL 534 >gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 567 Score = 343 bits (879), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 183/264 (69%), Positives = 222/264 (84%) Query: 1 LLMSLQAMNTNLRNIVNNVRTGTVTIATASREIAAGNMDLSSRTESQASALEETASAMEG 60 L +L AMNT+LR IV+ VR+GT IATAS +I++GN+DLSSRTE QAS+LEETASAME Sbjct: 250 LTAALAAMNTSLRRIVSQVRSGTDAIATASGQISSGNLDLSSRTEEQASSLEETASAMEE 309 Query: 61 LISTVRSNADNAREASELASSASSIAIEGGNAVDDMVQTMGEINASSKKIVDIISVIDGI 120 L STVR NA+NAR+A++LA SAS+IA EGG V +++TMG I+ASSKKIVDIISVID I Sbjct: 310 LTSTVRQNAENARQANQLALSASTIAEEGGKVVSQVIETMGSIDASSKKIVDIISVIDSI 369 Query: 121 AFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKALIDDSVKRVSNG 180 AFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA AAKEIK LID+SV++V G Sbjct: 370 AFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSATAAKEIKTLIDNSVQQVGLG 429 Query: 181 SMQVERAGATMANVVTSVKRVTSIVHEISEASQEQAEGIEQVNDTVTQLDHVTQKNAALV 240 S V++AG T++ VV+SV+RVT ++ EIS AS EQ +GIEQVN +TQ+D VTQ+NAALV Sbjct: 430 SGLVQKAGVTISEVVSSVQRVTDVMSEISAASGEQTQGIEQVNQAITQMDEVTQQNAALV 489 Query: 241 EEAASAADAMQQQAANLAKLVSVF 264 EEAASA+ ++ QA L++LV VF Sbjct: 490 EEAASASQSLSHQAQRLSELVGVF 513 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 332 bits (852), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 194/290 (66%), Positives = 229/290 (78%), Gaps = 5/290 (1%) Query: 1 LLMSLQAMNTNLRNIVNNVRTGTVTIATASREIAAGNMDLSSRTESQASALEETASAMEG 60 LL +L+ MN NL +IV VR GT TI TASREIA GN+DLS+RTE+QA +LEETASAME Sbjct: 246 LLAALKTMNGNLLDIVGRVRMGTETINTASREIATGNLDLSARTEAQAGSLEETASAMEQ 305 Query: 61 LISTVRSNADNAREASELASSASSIAIEGGNAVDDMVQTMGEINASSKKIVDIISVIDGI 120 L STV+ NADNAR+A+ELA+SAS +A +GG VD +V TMG I+ASS+KI DII VIDGI Sbjct: 306 LTSTVKQNADNARQANELAASASQVATQGGAVVDQVVATMGAIHASSQKIADIIGVIDGI 365 Query: 121 AFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKALIDDSVKRVSNG 180 AFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA+AAKEIK LIDDSV++V +G Sbjct: 366 AFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDDSVEKVDDG 425 Query: 181 SMQVERAGATMANVVTSVKRVTSIVHEISEASQEQAEGIEQVNDTVTQLDHVTQKNAALV 240 S V RAG TM VV SV RVT++V EI+ ASQEQ++GIEQVN +T +D TQ+NAALV Sbjct: 426 SRLVARAGDTMQEVVQSVARVTAVVREITLASQEQSDGIEQVNLAITHIDETTQQNAALV 485 Query: 241 EEAASAADAMQQQAANLAKLVSVFITDSSALVADSNVAASHVATTASPAS 290 E+AA+AA +MQ QAA+L VSVF L D+ V A V SP++ Sbjct: 486 EQAAAAARSMQDQAASLTDAVSVF-----RLEDDAQVLAVAVQRGTSPST 530 >gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 328 bits (842), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 187/264 (70%), Positives = 223/264 (84%) Query: 1 LLMSLQAMNTNLRNIVNNVRTGTVTIATASREIAAGNMDLSSRTESQASALEETASAMEG 60 LL +L++MN +L IV+ VR G+ TI TAS EIA GN+DLSSRTE QA ALEETASAME Sbjct: 248 LLAALKSMNDSLHRIVSEVRQGSDTINTASAEIATGNLDLSSRTEEQAGALEETASAMEE 307 Query: 61 LISTVRSNADNAREASELASSASSIAIEGGNAVDDMVQTMGEINASSKKIVDIISVIDGI 120 L STV+ NADNAR+A+ LA++AS +A++GG+ V +VQTMGEIN +S+KIVDIISVIDGI Sbjct: 308 LTSTVKQNADNARQANSLAATASEVAVQGGSVVGQVVQTMGEINDASRKIVDIISVIDGI 367 Query: 121 AFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKALIDDSVKRVSNG 180 AFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AAKEIKALIDDSV RV NG Sbjct: 368 AFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKALIDDSVSRVDNG 427 Query: 181 SMQVERAGATMANVVTSVKRVTSIVHEISEASQEQAEGIEQVNDTVTQLDHVTQKNAALV 240 S VE+AG TM VV SV+RVT +V EIS AS EQ++GIEQ+N +TQ+D VTQ+NAALV Sbjct: 428 SRLVEQAGTTMTEVVASVRRVTDVVAEISAASNEQSDGIEQINHAITQMDQVTQQNAALV 487 Query: 241 EEAASAADAMQQQAANLAKLVSVF 264 EEAA+AA ++Q+Q+ L+ VSVF Sbjct: 488 EEAAAAAQSLQEQSTRLSATVSVF 511 >gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 576 Score = 325 bits (832), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 191/295 (64%), Positives = 232/295 (78%), Gaps = 1/295 (0%) Query: 1 LLMSLQAMNTNLRNIVNNVRTGTVTIATASREIAAGNMDLSSRTESQASALEETASAMEG 60 LL +L++MN NL IV VR GT TI TASREIA GN+DLSSRTE QA ALEETASAME Sbjct: 249 LLGALKSMNDNLHRIVAEVRAGTDTINTASREIATGNLDLSSRTEQQAGALEETASAMEE 308 Query: 61 LISTVRSNADNAREASELASSASSIAIEGGNAVDDMVQTMGEINASSKKIVDIISVIDGI 120 L STVR NADNAR+A+ LA +AS +AI+GG+ V ++VQTMG+IN +S+KIVDIISVIDGI Sbjct: 309 LTSTVRQNADNARQANTLAETASQVAIQGGSVVGEVVQTMGQINDASRKIVDIISVIDGI 368 Query: 121 AFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKALIDDSVKRVSNG 180 AFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSAAAAKEIK+LID SV+RV +G Sbjct: 369 AFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKSLIDASVERVESG 428 Query: 181 SMQVERAGATMANVVTSVKRVTSIVHEISEASQEQAEGIEQVNDTVTQLDHVTQKNAALV 240 S V +AGATM VV SVKRVT +V EI+ AS EQ++GIEQ+N + Q+D VTQ+NAALV Sbjct: 429 SRLVGQAGATMEEVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQMDEVTQQNAALV 488 Query: 241 EEAASAADAMQQQAANLAKLVSVF-ITDSSALVADSNVAASHVATTASPASPALS 294 E+AA+AA ++Q+Q+ L+ V +F + + A A + +PA P L+ Sbjct: 489 EQAAAAAQSLQEQSGRLSDTVGIFRLGNDHAHQPSPLSAPVQRSVQVAPARPVLA 543 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.307 0.118 0.287 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 433,883 Number of extensions: 9914 Number of successful extensions: 261 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 155 Number of HSP's successfully gapped: 71 Length of query: 308 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 223 Effective length of database: 1,217,395 Effective search space: 271479085 Effective search space used: 271479085 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 130 (54.7 bits)