BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0132.0030.p (468 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311808|ref|YP_003775900.1| two component sensor histidine ... 99 1e-21 gi|300313070|ref|YP_003777162.1| two component sensor histidine ... 96 6e-21 gi|300310566|ref|YP_003774658.1| Hpt sensor hybrid histidine kin... 89 9e-19 gi|300313022|ref|YP_003777114.1| two component sensor histidine ... 86 8e-18 gi|300313895|ref|YP_003777987.1| two-component system sensor his... 83 4e-17 >gi|300311808|ref|YP_003775900.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 289 Score = 98.6 bits (244), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 76/248 (30%), Positives = 125/248 (50%), Gaps = 16/248 (6%) Query: 224 LAVQTFSVNRALEVQRRREEYLSFIAHDLRTPLNAVALASKVLESTLASQNADPRAARMI 283 L Q + +A V R ++E+L+ ++H+LRTPLNA+ ++ L L + R + + Sbjct: 33 LETQRAARRQADSVTRLKDEFLATLSHELRTPLNAIVGWTQYL---LNDHSDADRLVKGL 89 Query: 284 KVLQRNVQSMSGLVAKVIEENDSMKTESGVKLERRNIDLWPLVESMVYDLNPVAGTGSTR 343 +V++RN + + +V +++ + + + ++LE R +DL + E + + P A Sbjct: 90 QVIERNARLQAQMVEDLLDMSRMLAGK--LRLETRPMDLASVAEEAIAAVRPAAEARQIE 147 Query: 344 LLNDVPEELVIYADANLLRRMMQNLIANAITHTP-HGEVVIGAAHTADGSGTECWVSDNG 402 L + + VI D L++++ NL+ NAI TP G V + D E VSDNG Sbjct: 148 LHPALGQGGVILGDPARLQQVVWNLLMNAIKFTPRQGRVSLSLRQHDDTVALE--VSDNG 205 Query: 403 LGISKDRMDLIFEKFETETREQG-------GLGLGLAIFKTFVEAHEGSFDVVSE-PGKG 454 GI + + +F++F E G GLGLGLAI + VE H G S PG G Sbjct: 206 RGIKGEFLGSVFDRFTQEDVSTGSTGSTASGLGLGLAIARHLVELHGGQIRAASAGPGMG 265 Query: 455 SRFSFILP 462 + F+ LP Sbjct: 266 AAFTVTLP 273 >gi|300313070|ref|YP_003777162.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 939 Score = 95.9 bits (237), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 81/262 (30%), Positives = 124/262 (47%), Gaps = 25/262 (9%) Query: 217 VFDSAIGLAVQTFSVNRA-------LEVQRRREEYLSFIAHDLRTPLNAVALASKVLEST 269 +F S I +A++ +E +R R LS I+HDLRTPL ++ ++ VL + Sbjct: 677 IFCSQIAMAIERLHYAEVAQDALVTMESERLRNSLLSAISHDLRTPLTSLVGSADVLAAN 736 Query: 270 LASQNADPRAARMIKVLQRNVQSMSGLVAKVIEENDSMKTESGVKLERRNIDLWPLVESM 329 A + D RA M + + Q M GL+ ++ D + ++GV R W +E + Sbjct: 737 -ARLDDDARA--MARTISEQSQKMVGLMNNLL---DMARLQAGVVTLNRQ---WNALEEL 787 Query: 330 VYD-LNPVAGTGSTRLLND--VPEELVIYADANLLRRMMQNLIANAITHTPHGEVVIGAA 386 L +A R ++ PE ++ DA LL R++ NL+ NAI ++P G + +A Sbjct: 788 AGSALRLLAKALEGRQVDTRIAPELPLLRVDAVLLERVLANLVENAIKYSPPGTPIGISA 847 Query: 387 HTADGSG---TECWVSDNGLGISKDRMDLIFEKFETETREQG--GLGLGLAIFKTFVEAH 441 H G G + V D G G FEKF E G+GLGLAI + +EAH Sbjct: 848 HVEHGDGAPQVKVCVMDQGRGFPPTMTQHAFEKFTRGDNESATPGVGLGLAICRAIIEAH 907 Query: 442 EGSFDVV-SEPGKGSRFSFILP 462 +G + E G+G+ F LP Sbjct: 908 QGRIWIAPQEAGQGATVCFTLP 929 >gi|300310566|ref|YP_003774658.1| Hpt sensor hybrid histidine kinase [Herbaspirillum seropedicae SmR1] Length = 723 Score = 88.6 bits (218), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 75/233 (32%), Positives = 117/233 (50%), Gaps = 21/233 (9%) Query: 241 REEYLSFIAHDLRTPLNAVALASKVLESTLASQNADPRAARMIKVLQRNVQSMSGLVAKV 300 R +LS ++H++RTP+NAV + +L ST D + A K ++ + ++ G+V V Sbjct: 87 RGAFLSTMSHEIRTPMNAVLGMAGLLRST----RLDTQQAEFAKAIEDSAHALLGIVNDV 142 Query: 301 IEENDSMKTESG-VKLERRNIDLWPLVESMVYDLNPVAGTGSTRLL----NDVPEELVIY 355 + D K + G + + DL +VE+ L+ A RLL + +P LV Sbjct: 143 L---DFSKIDVGKMDIAVVEFDLAKVVEASAEALSFKAREKRVRLLAHLDSRLPPRLV-- 197 Query: 356 ADANLLRRMMQNLIANAITHTPHGEVVIGAAH---TADGSGTECWVSDNGLGISKDRMDL 412 D +R+++ NL+ NA+ T GEV++ T+D V D+G+G+ +D + Sbjct: 198 GDPGRIRQILLNLLGNALKFTHAGEVLLRVQALQVTSDHCRVRFEVRDSGIGMDEDTLRR 257 Query: 413 IFEKF----ETETREQGGLGLGLAIFKTFVEAHEGSFDVVSEPGKGSRFSFIL 461 +F F + TR+ GG GLGL+I K VE GS V S G GS F F L Sbjct: 258 LFSPFAQADSSVTRQYGGTGLGLSICKRLVELMGGSIGVESALGTGSCFWFEL 310 >gi|300313022|ref|YP_003777114.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 556 Score = 85.5 bits (210), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 77/257 (29%), Positives = 120/257 (46%), Gaps = 19/257 (7%) Query: 216 LVFDSAIGLAVQTFSVNR--ALEVQRRREEYLSFIAHDLRTPLNAVALASKVLESTLASQ 273 LVF++ + + +R AL+ + + +LS ++H+ RTPLN V S L L Sbjct: 304 LVFNAVLLWLAGSLVRSRREALQANQAKSRFLSNMSHEFRTPLNGVLGYSDALREELGE- 362 Query: 274 NADPRAARMIKVLQRNVQSMSGLVAKVIEENDSMKTESGVKLERRNIDLWPLVESMVYDL 333 P A + + + + LV ++E + V L+ NI LV + Sbjct: 363 --SPLAQYAVAI-HDSGNRLLDLVNAILEVTELEDRRVAVHLDPANIR--ELVGQAIARH 417 Query: 334 NPVAGTGS----TRLLNDVPEELVIYADANLLRRMMQNLIANAITHTPHGEVVIGAAHTA 389 P A R+ DVP+ LV D ++R++ NLI+NA+ +T HG V++ + Sbjct: 418 YPQAQAKGLPLECRIGEDVPQILV--CDERKIQRVLDNLISNAVRYTDHGRVMVEVERSG 475 Query: 390 DGSGTECWVSDNGLGISKDRMDLIFEKF----ETETREQGGLGLGLAIFKTFVEAHEGSF 445 T + D G+GI+ + + IFEKF ++ R Q G GLGL I + V G Sbjct: 476 PQQLT-MRIKDTGIGIAASQQNDIFEKFTQADDSPRRSQEGAGLGLTIAQRLVMLMGGQL 534 Query: 446 DVVSEPGKGSRFSFILP 462 + SE +GS FSF LP Sbjct: 535 VLQSEQHQGSTFSFTLP 551 >gi|300313895|ref|YP_003777987.1| two-component system sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 475 Score = 83.2 bits (204), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 66/253 (26%), Positives = 122/253 (48%), Gaps = 22/253 (8%) Query: 222 IGLAVQTFSVNRALEVQRR---REEYLSFIAHDLRTPLNAVALASKVLESTLASQNADPR 278 +G+ Q F+ A+ ++R R E+++ ++H+LRTPL + + LE + +A Sbjct: 227 VGMLAQDFN-QLAMTLERNEKLRREFMADVSHELRTPLAILNGQLEALEDGVLQPDA--- 282 Query: 279 AARMIKVLQRNVQSMSGLVAKVIEENDSMKTESGVKLERRNIDLWPLVESMVYDLNPVAG 338 + ++ L+ V+ ++ LV + + S+ + R +IDL PL+ + Sbjct: 283 --QTLRSLKSEVEHLNKLVGDLYDL--SLADAGALTYRRADIDLAPLLRDSAALYSDRFS 338 Query: 339 TGSTRLLNDVPEELVIYADANLLRRMMQNLIANAITHTPHGEVVIGAAHTADGSGTECW- 397 RL ++P + ++ DA L++++ NL N++ +T G + AH + W Sbjct: 339 QRGMRLSCELPASMPVHGDAARLQQLLSNLFENSLRYTDAGGRLQVHAHLQQ----QHWH 394 Query: 398 --VSDNGLGISKDRMDLIFEKF----ETETREQGGLGLGLAIFKTFVEAHEGSFDVVSEP 451 D+ G+ + M +FE+F + R GG GLGLAI + V+AH+G+ + P Sbjct: 395 LVFDDSEPGVPPEVMARLFERFFRVEASRNRASGGAGLGLAICRRIVDAHQGTIGASASP 454 Query: 452 GKGSRFSFILPNR 464 G R +LP R Sbjct: 455 LGGLRVVVVLPAR 467 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.133 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,363,934 Number of extensions: 55070 Number of successful extensions: 375 Number of sequences better than 1.0e-08: 37 Number of HSP's gapped: 314 Number of HSP's successfully gapped: 38 Length of query: 468 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 379 Effective length of database: 1,198,455 Effective search space: 454214445 Effective search space used: 454214445 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)