BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0132.0029.p
         (578 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313046|ref|YP_003777138.1| RecA-superfamily ATPase [Herbas...   133   3e-32

>gi|300313046|ref|YP_003777138.1| RecA-superfamily ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 490

 Score =  133 bits (335), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 127/459 (27%), Positives = 202/459 (44%), Gaps = 41/459 (8%)

Query: 36  PDPTSTRSA------TGISGLDIILGGGITRDRLYLVEGTPGTGKTTFGLQFLLEGLKQG 89
           P PT  R +      TGI+G D ILGGG+    LYL++G  G+GKTT   Q    G  Q 
Sbjct: 10  PAPTGGRPSRISLLSTGIAGFDEILGGGLPAGSLYLIQGLAGSGKTTLASQI---GWAQA 66

Query: 90  EPGLYITLSETATELRAVAASHGWSLEGLSLYELIDEEDLNPDFQQSILHPSEIELG--E 147
             G  + L      L  +A SH   L  +S ++  DE  +    Q    + +    G   
Sbjct: 67  RGGNQVML------LTLIAESHAKMLNHVSNFDFFDESLVGDRMQMLSGYAALASEGLRG 120

Query: 148 TIKNVIARVDELKPARVIFDSLSEMRLLAQNPLRYRRQILALKHFFSTRKCTVLMLDDRT 207
            ++ + A +   +PA +I D    +R    + L     + +L     T  CT L+L    
Sbjct: 121 LLRMISAELSRHRPAMLIIDGFRSVRDSGPSDLNLSEFMHSLNALVFTMNCTTLLLSPVE 180

Query: 208 AEAGDLQLHSIAHGVISLEQLAQDFGTERRRLRVIKMRGISFSGGYHDFVLKTGGMHVFP 267
               + + +++  GVI L Q        R  ++V K+RG +   G H F +   G+ +FP
Sbjct: 181 GNLPESE-NTLVDGVIELSQYESGMQLVRE-IKVFKLRGANHLLGKHVFEINQSGVEIFP 238

Query: 268 RLIA----ADHFADFENSMATTGVPGLDVLLGGGLVRGTNTLLSGPSGVGKTTTALRCTL 323
           R  A    A       +   + G+P  D  +GGG+V G+ T L G  GVGKT   L    
Sbjct: 239 RFEATATRAGKVPGTSDRYVSVGIPSWDKCIGGGVVSGSLTCLLGSPGVGKTLMGLHFIE 298

Query: 324 GALERGETAAYYLFDEGVGTLIARARALGMDIDPYLADGSLALHQINPAEMSPGEFSATL 383
             L+ G+      F E    L+A+AR  GM +D ++  G+L +    P EM   + +  +
Sbjct: 299 QGLKDGQQCLILGFYESPERLLAKARKAGMQLDAHIDSGALQVMWQLPLEMLCDDLAKRM 358

Query: 384 RNAVEKEGRTFVVIDSLNAYLQGMPGEKYLLLQMHEMLSY-------LNQQGVTTMLVLG 436
            + + + G T ++ID       G+ G + +++Q   M  +       L  +GVTT  +  
Sbjct: 359 LDDIARRGVTRLLID-------GVDGLRSIVVQPQRMRPFLVALTNELRARGVTT-FITE 410

Query: 437 QHGLVGEIRSDID--LSYLSDAILLFRFFEVRGDIAXRQ 473
           Q     E R  +D   S L + ++L  +  V+ D+  RQ
Sbjct: 411 QLPYFRESRPQVDPSSSQLYENMMLLEYV-VKDDVNRRQ 448



 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 99/237 (41%), Gaps = 15/237 (6%)

Query: 34  RAPDPTSTRSATGISGLDIILGGGITRDRLYLVEGTPGTGKTTFGLQFLLEGLKQGEPGL 93
           + P  +    + GI   D  +GGG+    L  + G+PG GKT  GL F+ +GLK G+  L
Sbjct: 249 KVPGTSDRYVSVGIPSWDKCIGGGVVSGSLTCLLGSPGVGKTLMGLHFIEQGLKDGQQCL 308

Query: 94  YITLSETATELRAVAASHGWSLEGLSLYELIDEEDLNPDFQQSILHPSEIELGETIKNVI 153
            +   E+   L A A   G  L+       ID   L   +Q     P E+   +  K ++
Sbjct: 309 ILGFYESPERLLAKARKAGMQLDA-----HIDSGALQVMWQL----PLEMLCDDLAKRML 359

Query: 154 ARVDELKPARVIFDSLSEMRLLAQNPLRYRRQILALKHFFSTRKCTVLMLDD-----RTA 208
             +      R++ D +  +R +   P R R  ++AL +    R  T  + +       + 
Sbjct: 360 DDIARRGVTRLLIDGVDGLRSIVVQPQRMRPFLVALTNELRARGVTTFITEQLPYFRESR 419

Query: 209 EAGDLQLHSIAHGVISLEQLAQDFGTERRRLRVIKMRGISFSGGYHDFVLKTGGMHV 265
              D     +   ++ LE + +D    RR++ V+K+R   + G      +   G+ +
Sbjct: 420 PQVDPSSSQLYENMMLLEYVVKD-DVNRRQIAVMKLRENGYDGAARLMNISDAGIEI 475


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,744,103
Number of extensions: 69660
Number of successful extensions: 294
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 292
Number of HSP's successfully gapped: 2
Length of query: 578
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 488
Effective length of database: 1,193,720
Effective search space: 582535360
Effective search space used: 582535360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)