BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0132.0027.p (178 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311773|ref|YP_003775865.1| two component response regulato... 317 3e-88 gi|300311909|ref|YP_003776001.1| response regulator consisting o... 127 5e-31 gi|300314013|ref|YP_003778105.1| two component response regulato... 63 1e-11 gi|300313916|ref|YP_003778008.1| two component response regulato... 60 1e-10 gi|300312654|ref|YP_003776746.1| C4-dicarboxylate transport resp... 60 1e-10 >gi|300311773|ref|YP_003775865.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 178 Score = 317 bits (813), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 155/178 (87%), Positives = 163/178 (91%) Query: 1 MPTERLLLIIEDDAAFARTLSRSFERRGYTVLHAASQDEAAALLAQHNPGYAVVDLKLNG 60 MP +RLLLIIEDDAAFARTL RSFERRGYTVL AASQ+EAA L QH PGYAVVDLKL G Sbjct: 1 MPADRLLLIIEDDAAFARTLGRSFERRGYTVLLAASQEEAAQHLQQHRPGYAVVDLKLGG 60 Query: 61 NTSGLSCVQMLHQHNEAMLIVVLTGFASIGTAVEAIKLGACQYLAKPSNTDDIEAAFGHI 120 N SGL+CVQMLH H+E MLIVVLTGFASI TAVEAIKLGACQYLAKPSNTDDIEAAFGH+ Sbjct: 61 NASGLACVQMLHAHDEDMLIVVLTGFASITTAVEAIKLGACQYLAKPSNTDDIEAAFGHV 120 Query: 121 AGNTEVELTARSTSIKNLEWERIHEVLVETDFNISETARRLGMHRRTLARKLEKQRVK 178 AG +EVEL AR+TSIK LEWERIHEVLV+TDFNISETARRLGMHRRTLARKLEKQRVK Sbjct: 121 AGVSEVELPARATSIKTLEWERIHEVLVDTDFNISETARRLGMHRRTLARKLEKQRVK 178 >gi|300311909|ref|YP_003776001.1| response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Herbaspirillum seropedicae SmR1] Length = 182 Score = 127 bits (319), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 83/179 (46%), Positives = 104/179 (58%), Gaps = 11/179 (6%) Query: 7 LLIIEDDAAFARTLSRSFERRGYTVLHAASQDEAAALLAQHNPGYAVVDLKLNGNTSGLS 66 LI++D+ FA TL+RS RRG+ A S + A + YA +DL+L + SGL Sbjct: 5 FLILDDNDVFAGTLARSLARRGFRATVAHSGEAALEAARRERFDYATIDLQLEKD-SGLQ 63 Query: 67 CVQMLHQHNEAMLIVVLTGFASIGTAVEAIKLGACQYLAKPSNTDDIEAAFGHIAGNTE- 125 V L Q ++VLTG+ASI T V+AIK GA YLAKP+N D I +A H +GN E Sbjct: 64 WVSPLRQALPHARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSILSALSH-SGNGEQ 122 Query: 126 -------VELTARSTSIKNLEWERIHEVLVETDFNISETARRLGMHRRTLARKLEKQRV 177 VE A S++ LEWE I VL E + NIS TAR L MHRRTL RKL K+ V Sbjct: 123 AAETPLPVE-EASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTLQRKLAKRPV 180 >gi|300314013|ref|YP_003778105.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 228 Score = 63.2 bits (152), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 35/108 (32%), Positives = 57/108 (52%), Gaps = 1/108 (0%) Query: 7 LLIIEDDAAFARTLSRSFERRGYTVLHAASQDEAAALLAQHNPGYAVVDLKLNGNTSGLS 66 +L++EDD +R L R+ ERRG+ V H A A + + V+DL + G GL Sbjct: 3 ILLVEDDIDMSRALLRALERRGFQVTHCADGISALSHIKDGIGDLVVLDLNIPG-LDGLH 61 Query: 67 CVQMLHQHNEAMLIVVLTGFASIGTAVEAIKLGACQYLAKPSNTDDIE 114 +Q + + ++VLT ++G V + GA YLAKP + D+++ Sbjct: 62 LLQRIRSQDIGTPVIVLTARGAVGDRVVGLNAGADDYLAKPFDLDELD 109 >gi|300313916|ref|YP_003778008.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 448 Score = 59.7 bits (143), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 38/101 (37%), Positives = 58/101 (57%), Gaps = 2/101 (1%) Query: 7 LLIIEDDAAFARTLSRSFERRGYTVLHAASQDEAAALLAQHNPGYAVVDLKLNGNTSGLS 66 +LI++DDAAF +L+ + G+ VL A S LLA H A+VDL++ + GL+ Sbjct: 4 ILIVDDDAAFRGSLAETVSDLGHDVLEAGSTAAGLKLLAAHAVDAAIVDLRMP-DEDGLA 62 Query: 67 CVQMLHQHNEAMLIVVLTGFASIGTAVEAIKLGACQYLAKP 107 +Q A+ ++LT +AS +EAI+LGA +L KP Sbjct: 63 FLQR-APAIAAIPCIMLTAYASGDNTIEAIRLGAFDHLTKP 102 >gi|300312654|ref|YP_003776746.1| C4-dicarboxylate transport response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 445 Score = 59.7 bits (143), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 59/106 (55%), Gaps = 1/106 (0%) Query: 8 LIIEDDAAFARTLSRSFERRGYTVLHAASQDEAAALLAQHNPGYAVVDLKLNGNTSGLSC 67 L+IED+ R +++ E G+ V S +EA L+ + G V D++L G SGL Sbjct: 11 LLIEDEQTVRRATAQALELGGFAVTACGSAEEALPLITRDFAGVVVSDVRLPG-LSGLDV 69 Query: 68 VQMLHQHNEAMLIVVLTGFASIGTAVEAIKLGACQYLAKPSNTDDI 113 + + + + ++V+TG +G AVEA++ GA ++ KP ++D + Sbjct: 70 LARVVAIDHDLPVIVVTGHGDVGMAVEAMRAGAYDFVEKPFSSDTL 115 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.131 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 456,557 Number of extensions: 14305 Number of successful extensions: 144 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 158 Number of HSP's successfully gapped: 9 Length of query: 178 Length of database: 1,619,870 Length adjustment: 79 Effective length of query: 99 Effective length of database: 1,245,805 Effective search space: 123334695 Effective search space used: 123334695 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)