BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0132.0015.p (493 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase ... 162 4e-41 gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbasp... 159 4e-40 gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate A... 159 7e-40 gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A... 157 1e-39 gi|300309874|ref|YP_003773966.1| nitrate/sulfonate/bicarbonate A... 157 2e-39 >gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 162 bits (411), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 76/167 (45%), Positives = 110/167 (65%) Query: 1 LLRLIVGLEEDYQGEVLLDGERIVGTSLRRGIVFQEHRLFPWLTVESNIQLGLLNADLTP 60 LL + G +G + LDG+ + G RG+VFQ+ L PW +V+ N+ LGL A ++ Sbjct: 48 LLNAMAGFLPLSEGRISLDGQPVSGPGAERGVVFQKDSLLPWKSVQDNVALGLKFAGVSK 107 Query: 61 GQKRQAVREHIALVGLDGFEKSYPHQLSGGMAQRVAIARALVSKPEILLLDEPFGALDAL 120 R+ +E + LVGL F ++ P++LSGGM QRV +ARAL P+ILL+DEPFGALD++ Sbjct: 108 SDSRERAQELLRLVGLQDFARAAPYELSGGMRQRVGLARALAPNPKILLMDEPFGALDSM 167 Query: 121 TRAYLQQELHRIWQAEGISMILVTHDVEEAIYLGDKVVVMEPRPGRI 167 TR +Q+ L +W G + +TH +EEA++LG +V+VM PRPGRI Sbjct: 168 TREQMQELLVSVWARTGKQVFFITHSIEEALFLGTEVIVMSPRPGRI 214 >gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 159 bits (402), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 82/194 (42%), Positives = 122/194 (62%), Gaps = 1/194 (0%) Query: 1 LLRLIVGLEEDYQGEVLLDGERIVGTSLRRGIVFQEHRLFPWLTVESNIQLGLLNADLTP 60 LL + GLE+ G V DG+ I G R ++FQE+ L+PWLT++ N+ L L + Sbjct: 44 LLHMAAGLEKPSSGSVAGDGQTIRGPHPERTLMFQENALYPWLTLQQNVALALEFQSVDK 103 Query: 61 GQKRQAVREHIALVGLDGFEKSYPHQLSGGMAQRVAIARALVSKPEILLLDEPFGALDAL 120 + + R + V L GFE YPHQ+SGGM QR A+ARA +S+P+ LLLDEPFGALDAL Sbjct: 104 KKAAEQARVWLENVKLKGFEHYYPHQVSGGMRQRAALARAFISQPKALLLDEPFGALDAL 163 Query: 121 TRAYLQQELHRIWQAEGISMILVTHDVEEAIYLGDKVVVMEPRPGRIRRIVPVGLAHPRE 180 TR LQ L + + +G +++LVTHDV+EA++L D++ V PRP ++ + + + H + Sbjct: 164 TRMTLQDALRDLIRQQGPTVVLVTHDVDEALFLADRIFVFSPRPAKVLKEFNL-VHHEKT 222 Query: 181 RAAVGFAEVKQQVL 194 FA +++ +L Sbjct: 223 HDLSEFAAIRRDIL 236 >gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 275 Score = 159 bits (401), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 83/178 (46%), Positives = 106/178 (59%) Query: 2 LRLIVGLEEDYQGEVLLDGERIVGTSLRRGIVFQEHRLFPWLTVESNIQLGLLNADLTPG 61 L LI GL + GEV + G+ + G R G VFQ +FPW +V N+ G L Sbjct: 69 LSLITGLLKPTLGEVRVMGQPVNGIDPRIGFVFQNDAVFPWRSVRENVAAGPLFRGQPKA 128 Query: 62 QKRQAVREHIALVGLDGFEKSYPHQLSGGMAQRVAIARALVSKPEILLLDEPFGALDALT 121 Q E I VGLD F YPHQLSGGM +RVA+A+ ++ PEILL+DEPF ALD T Sbjct: 129 QAHALADEWIRRVGLDKFGDHYPHQLSGGMRKRVALAQTFINSPEILLMDEPFSALDMQT 188 Query: 122 RAYLQQELHRIWQAEGISMILVTHDVEEAIYLGDKVVVMEPRPGRIRRIVPVGLAHPR 179 R +Q EL R+W A S++ VTHD+EEAI L DKV V+ RP ++ + P+ L PR Sbjct: 189 RTLMQDELLRLWSAHSGSVVFVTHDLEEAIALADKVYVLTARPATLKSVYPIDLPRPR 246 >gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 157 bits (398), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 86/193 (44%), Positives = 115/193 (59%) Query: 1 LLRLIVGLEEDYQGEVLLDGERIVGTSLRRGIVFQEHRLFPWLTVESNIQLGLLNADLTP 60 LL I G G++L D + + RG+VFQE+ LFPW+TVE N+ GL Sbjct: 55 LLNAIAGFALPSSGQILTDDKVVSEPGPDRGMVFQEYALFPWMTVEQNVAFGLEIKGTPK 114 Query: 61 GQKRQAVREHIALVGLDGFEKSYPHQLSGGMAQRVAIARALVSKPEILLLDEPFGALDAL 120 + Q V + + +GL F +P LSGGM QRVAIAR L I+L+DEPFGALDAL Sbjct: 115 AEIHQRVTQLLDKLGLIDFRTRFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDAL 174 Query: 121 TRAYLQQELHRIWQAEGISMILVTHDVEEAIYLGDKVVVMEPRPGRIRRIVPVGLAHPRE 180 TR LQ EL RIW +++ VTH +EEAIYL D++VVM RPG ++R + V L R+ Sbjct: 175 TRRNLQDELLRIWDEFRKTIVFVTHSIEEAIYLADRIVVMTYRPGTVKRDMLVNLPRLRD 234 Query: 181 RAAVGFAEVKQQV 193 A F +K+++ Sbjct: 235 PADPEFNALKREL 247 >gi|300309874|ref|YP_003773966.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 447 Score = 157 bits (396), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 81/189 (42%), Positives = 120/189 (63%), Gaps = 3/189 (1%) Query: 1 LLRLIVGLEEDYQGEVLLDGERIVGTSLRRGIVFQEHRLFPWLTVESNIQLGLLNADLTP 60 +LR + GL E G + G+ + G + +VFQ L+PWLTVE N+ +GL++ + T Sbjct: 59 ILRCLTGLVEPSSGHTMAAGKPLYGVNRDASVVFQTFALYPWLTVEQNVAVGLMSHNPTR 118 Query: 61 GQKRQAVREHIALVGLDGFEKSYPHQLSGGMAQRVAIARALVSKPEILLLDEPFGALDAL 120 ++ AV I L+GL + +YP +LSGGM QRV IARALVSKP++L LDE F ALD L Sbjct: 119 EERDAAVDRAIELIGLGNYHSAYPRELSGGMRQRVGIARALVSKPKLLCLDEAFSALDVL 178 Query: 121 TRAYLQQELHRIWQAEG---ISMILVTHDVEEAIYLGDKVVVMEPRPGRIRRIVPVGLAH 177 T L+QEL +W+A S+ +VTH++EEA+ + ++VV+ PRPGR+ ++ L + Sbjct: 179 TAENLRQELISLWRAPDSGLTSIFMVTHNIEEAVEMATRIVVVFPRPGRLGLVLDNPLPY 238 Query: 178 PRERAAVGF 186 PR+ + F Sbjct: 239 PRDTKSPEF 247 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.138 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,639,531 Number of extensions: 71673 Number of successful extensions: 487 Number of sequences better than 1.0e-08: 105 Number of HSP's gapped: 413 Number of HSP's successfully gapped: 112 Length of query: 493 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 404 Effective length of database: 1,198,455 Effective search space: 484175820 Effective search space used: 484175820 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)