BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0132.0013.p (448 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309985|ref|YP_003774077.1| nitrate/sulfonate/bicarbonate A... 126 3e-30 gi|300309716|ref|YP_003773808.1| nitrate/sulfonate/bicarbonate A... 110 2e-25 gi|300311644|ref|YP_003775736.1| taurine ABC transporter permeas... 109 4e-25 gi|300310979|ref|YP_003775071.1| alkanesulfonates ABC transporte... 104 1e-23 gi|300312619|ref|YP_003776711.1| ABC transporter permease [Herba... 88 1e-18 >gi|300309985|ref|YP_003774077.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 278 Score = 126 bits (317), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 85/246 (34%), Positives = 131/246 (53%), Gaps = 1/246 (0%) Query: 2 PKFLRGWILPAALVLLWWLAVKFNWSASPLLVPVDKVWDTAVRQVRSGELAIALEASLRR 61 P GWI+P A +LL + + LL P ++ T + GEL + ASL R Sbjct: 23 PGRFTGWIVPLAFLLLVEAGARLELIPARLLPPPSELAHTLWSLAQRGELLPHIAASLAR 82 Query: 62 DLIGFAIGVSAGLAFGIAFGLSRLFERLIGPTFHTLKQISLFAWIPLLSVWFGLGDAAKV 121 GF IG + +A G+ G+SR E L+ P+F L+ I AWIPLL +W G+ + KV Sbjct: 83 VAAGFVIGSALAVALGLLVGISRRAEALLEPSFQALRAIPSLAWIPLLLLWLGIDETPKV 142 Query: 122 AFLSLAAFFPVVLNTFEGIRSVPADLVEAARVLKFNRRQWLYKLILPAAAPSILAGIHLA 181 +++ AFFPV LN GIR + L+E N + + ++LPA+ P + AG+ Sbjct: 143 VLIAIGAFFPVYLNLVAGIRDIDHKLIEVGTTSGLNTQALIGHILLPASLPYLFAGLRGG 202 Query: 182 LIYAWLATLGAEYLLVSGKGIGNTMIDGRELFLMDLVIFGVIVVGFVGFALNWLAARLER 241 L AW+ + AE L+ + KG+G + DGRE DLV+ ++++ +G + L +E+ Sbjct: 203 LSLAWMFLVAAE-LIAATKGVGYLLSDGRESSRPDLVLAAILILALLGKLSDGLLRAVEQ 261 Query: 242 RLLAWR 247 + L WR Sbjct: 262 KSLGWR 267 >gi|300309716|ref|YP_003773808.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 273 Score = 110 bits (276), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 84/241 (34%), Positives = 131/241 (54%), Gaps = 2/241 (0%) Query: 7 GWILPAALVLLWWLAVKFNWSASPLLVPVDKVWDTAVRQVRSGELAIALEASLRRDLIGF 66 GWI P L W + K+ A+PL P D + + SGEL + SL R + GF Sbjct: 30 GWINPQILPSPWAVLRKWVEYATPL-KPYDPEAGSWLAWAFSGELVMDAIGSLYRVVAGF 88 Query: 67 AIGVSAGLAFGIAFGLSRLFERLIGPTFHTLKQISLFAWIPLLSVWFGLGDAAKVAFLSL 126 IG L G+ G S+ L+ T ++ I A+IPL +WFGLG+ + +SL Sbjct: 89 LIGAGLALPLGLLMGSSQRIYGLMNLTVQVIRPIPPIAYIPLAILWFGLGNPPALFLISL 148 Query: 127 AAFFPVVLNTFEGIRSVPADLVEAARVLKFNRRQWLYKLILPAAAPSILAGIHLALIYAW 186 AFFPV++NT G+R V + + AAR L ++ +++LPAA P IL+G+ + + A+ Sbjct: 149 GAFFPVLMNTIAGVRQVDSIYLRAARNLGASQSTLFLRVMLPAAVPYILSGVRIGIGTAF 208 Query: 187 LATLGAEYLLVSGKGIGNTMIDGRELFLMDLVIFGVIVVGFVGFALNWLAARLERRLLAW 246 + + AE + VS G+G +++ RE F D +I G+I +G +G A++ +RL +L W Sbjct: 209 IVVIVAEMIAVS-NGLGFRIMEAREYFWSDKIIAGMITIGLLGLAIDLGMSRLNNYMLRW 267 Query: 247 R 247 Sbjct: 268 H 268 >gi|300311644|ref|YP_003775736.1| taurine ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 293 Score = 109 bits (273), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 79/241 (32%), Positives = 125/241 (51%), Gaps = 11/241 (4%) Query: 17 LWWLAVKFNW-------SASPLLVPVDKVWDTAVRQVRSGELAIALEASLRRDLIGFAIG 69 LWWL + W + + +L +W+ + LA + ASL R L I Sbjct: 57 LWWLIAQTGWVPHLFLPTPAEVLKVAQSIWEDGYA---NATLAEHVGASLLRILTAGVIA 113 Query: 70 VSAGLAFGIAFGLSRLFERLIGPTFHTLKQISLFAWIPLLSVWFGLGDAAKVAFLSLAAF 129 V G+ G+ GL+R + ++ + A++PL+ +W G+G+A+K+ L+LA F Sbjct: 114 VLLGIPVGLLMGLNRWVKGVLDTPIEFYWPLPPLAYLPLMIIWLGIGEASKITLLTLAMF 173 Query: 130 FPVVLNTFEGIRSVPADLVEAARVLKFNRRQWLYKLILPAAAPSILAGIHLALIYAWLAT 189 PVVL+ G+RS+P + V AA L R Q L +++LP+A P IL GI +AL W +T Sbjct: 174 APVVLSAQAGVRSLPQERVNAALSLGATRWQLLTEVVLPSALPEILTGIRIALGVGW-ST 232 Query: 190 LGAEYLLVSGKGIGNTMIDGRELFLMDLVIFGVIVVGFVGFALNWLAARLERRLLAWRGR 249 L A L+ S +GIG ++ D V G+ ++ FA ++ LER L+ W+G+ Sbjct: 233 LVAAELIASNRGIGYMIMSASHFLATDAVFVGIALIATCAFAFSYGMRLLERALVPWKGK 292 Query: 250 S 250 S Sbjct: 293 S 293 >gi|300310979|ref|YP_003775071.1| alkanesulfonates ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 279 Score = 104 bits (260), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 89/243 (36%), Positives = 128/243 (52%), Gaps = 5/243 (2%) Query: 7 GWILPAALVLLWWLAVKFNWSASPLLVPVDKVWDTAVRQVRSGELAIALEASLRRDLIGF 66 GW+LP L++ W +A + W +S +L V A SGEL L S R GF Sbjct: 36 GWLLPLLLLVWWEVAAQAGWLSSRILPEPLAVLKAAWELSASGELWRHLAVSSGRAASGF 95 Query: 67 AIGVSAGLAFGIAFGLSRLFERLIGPTFHTLKQISLFAWIPLLSVWFGLGDAAKVAFLSL 126 A+G GL G+ G R E L+ T ++ I A IPL+ +WFG+ + AK+ +S+ Sbjct: 96 AVGAGLGLILGLLSGSLRSAELLLDTTLQMVRNIPALALIPLVILWFGIDETAKLFLVSV 155 Query: 127 AAFFPVVLNTFEGIRSVPADLVEAARVLKFNRRQW-LYK-LILPAAAPSILAGIHLALIY 184 FFPV LNTF GIRSV L+E A+ + W LY+ +ILP A P+IL G+ AL Sbjct: 156 GVFFPVYLNTFHGIRSVDQGLIEMAK--SYGLSGWPLYRDVILPGALPAILVGLRFALGL 213 Query: 185 AWLATLGAEYLLVSGKGIGNTMIDGRELFLMDLVIFGVIVVGFVGFALNWLAARLERRLL 244 W+ + AE + + GIG ++ RE D+V+ G+++ +G + A LER L Sbjct: 214 VWVLLIVAE-TISAQAGIGYMTMNAREFLQTDVVLVGILLYALLGKLADTAARWLERFWL 272 Query: 245 AWR 247 W Sbjct: 273 RWH 275 >gi|300312619|ref|YP_003776711.1| ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 257 Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 62/198 (31%), Positives = 99/198 (50%), Gaps = 12/198 (6%) Query: 14 LVLLWWLAVKFNWSASPLLVP-----VDKVWDTAVRQVRSGELAIALEASLRRDLIGFAI 68 ++L+W +A WS L+P ++W+ +V+S +AL SL R +G+ Sbjct: 23 ILLMWQIA---AWSLPSFLMPGVPSVAARLWE----EVQSSNFRLALFGSLYRLGMGYGS 75 Query: 69 GVSAGLAFGIAFGLSRLFERLIGPTFHTLKQISLFAWIPLLSVWFGLGDAAKVAFLSLAA 128 + G+ FG+ + F ++ L+ I AW+PL + G G+ V +++AA Sbjct: 76 ALVLGIGFGLVGAVLFFFREVLKSAIVILQSIPSIAWVPLFLILMGFGNLPIVVVVAIAA 135 Query: 129 FFPVVLNTFEGIRSVPADLVEAARVLKFNRRQWLYKLILPAAAPSILAGIHLALIYAWLA 188 FFP L+ SV V AARV+ +R L ++ LPA P ++ G LA AW A Sbjct: 136 FFPAALSVMNATESVQQVHVSAARVMGASRLSMLRRVYLPAVMPELITGAQLAFGNAWRA 195 Query: 189 TLGAEYLLVSGKGIGNTM 206 + AE L+ GKG+G T+ Sbjct: 196 LISAEMLVGFGKGLGRTL 213 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.325 0.139 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,345,306 Number of extensions: 55809 Number of successful extensions: 304 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 301 Number of HSP's successfully gapped: 15 Length of query: 448 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 360 Effective length of database: 1,203,190 Effective search space: 433148400 Effective search space used: 433148400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 132 (55.5 bits)