BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0132.0010.p
         (256 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309985|ref|YP_003774077.1| nitrate/sulfonate/bicarbonate A...    87   2e-18
gi|300310979|ref|YP_003775071.1| alkanesulfonates ABC transporte...    67   2e-12
gi|300310541|ref|YP_003774633.1| nitrate transporter permease [H...    59   3e-10

>gi|300309985|ref|YP_003774077.1| nitrate/sulfonate/bicarbonate ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 278

 Score = 86.7 bits (213), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 71/120 (59%)

Query: 1   VLPSPQSVLLTFIDLAASGEMFDNLKISLLRVLLGFGVGLAGGLLLGVAMGLSRVFKDYV 60
           +LP P  +  T   LA  GE+  ++  SL RV  GF +G A  + LG+ +G+SR  +  +
Sbjct: 52  LLPPPSELAHTLWSLAQRGELLPHIAASLARVAAGFVIGSALAVALGLLVGISRRAEALL 111

Query: 61  YPLFKAFSQVPVLGWLPLLMLLVGIDEALKIILISKAALVPIALNTFKGIENVPARYVEV 120
            P F+A   +P L W+PLL+L +GIDE  K++LI+  A  P+ LN   GI ++  + +EV
Sbjct: 112 EPSFQALRAIPSLAWIPLLLLWLGIDETPKVVLIAIGAFFPVYLNLVAGIRDIDHKLIEV 171


>gi|300310979|ref|YP_003775071.1| alkanesulfonates ABC transporter
           permease [Herbaspirillum seropedicae SmR1]
          Length = 279

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/131 (36%), Positives = 72/131 (54%)

Query: 1   VLPSPQSVLLTFIDLAASGEMFDNLKISLLRVLLGFGVGLAGGLLLGVAMGLSRVFKDYV 60
           +LP P +VL    +L+ASGE++ +L +S  R   GF VG   GL+LG+  G  R  +  +
Sbjct: 60  ILPEPLAVLKAAWELSASGELWRHLAVSSGRAASGFAVGAGLGLILGLLSGSLRSAELLL 119

Query: 61  YPLFKAFSQVPVLGWLPLLMLLVGIDEALKIILISKAALVPIALNTFKGIENVPARYVEV 120
               +    +P L  +PL++L  GIDE  K+ L+S     P+ LNTF GI +V    +E+
Sbjct: 120 DTTLQMVRNIPALALIPLVILWFGIDETAKLFLVSVGVFFPVYLNTFHGIRSVDQGLIEM 179

Query: 121 ARVLRFSRWQL 131
           A+    S W L
Sbjct: 180 AKSYGLSGWPL 190


>gi|300310541|ref|YP_003774633.1| nitrate transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 307

 Score = 59.3 bits (142), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 56/111 (50%)

Query: 24  NLKISLLRVLLGFGVGLAGGLLLGVAMGLSRVFKDYVYPLFKAFSQVPVLGWLPLLMLLV 83
           N+  SL RV  GFG+    G+ LG A+G          P+      V  L WLP+ +L+ 
Sbjct: 112 NVLASLQRVGTGFGLAALVGIPLGFAIGRVEFLARMFGPIISLLRPVSPLAWLPIGLLVF 171

Query: 84  GIDEALKIILISKAALVPIALNTFKGIENVPARYVEVARVLRFSRWQLLTR 134
                  I  I   ++ P+ +NT  G++ VP  Y+ VARVL  S W++LT+
Sbjct: 172 KSANPAAIWSIFICSIWPMIINTAVGVQRVPQDYMNVARVLNLSEWKVLTK 222


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.142    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 581,264
Number of extensions: 16566
Number of successful extensions: 105
Number of sequences better than 1.0e-08: 8
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 8
Length of query: 256
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 173
Effective length of database: 1,226,865
Effective search space: 212247645
Effective search space used: 212247645
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)