BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0132.0009.p (307 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309986|ref|YP_003774078.1| nitrate/sulfonate/bicarbonate A... 80 3e-16 gi|300313870|ref|YP_003777962.1| nitrate/sulfonate/bicarbonate A... 72 7e-14 gi|300310977|ref|YP_003775069.1| alkanesulfonates ABC transporte... 66 3e-12 gi|300310915|ref|YP_003775007.1| alkanesulfonates ABC transporte... 64 2e-11 >gi|300309986|ref|YP_003774078.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 328 Score = 79.7 bits (195), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 70/239 (29%), Positives = 119/239 (49%), Gaps = 21/239 (8%) Query: 22 RLRPARXVGAGAAILG---LQARAANKPAIVRIGVAQPGIGNPPQFSGSSAAVANAKGWV 78 RL PA G LG L + AA P ++R+ A +PP V GW+ Sbjct: 8 RLAPA---ALGVTALGGIPLLSSAAQPPKVIRLDYA---YYSPPSL------VLRKFGWL 55 Query: 79 EEEFKADGIKVEWFFFKGAGPAVNEALSNKQLDFAFQGDLPSIVAKSAGLKTRLILATGV 138 EE+ KA G +V+W +G+ A+ E L++ +DF L +++A++ G + + Sbjct: 56 EEDLKAQGTEVKWVLSQGSNRAL-EYLNSDSVDFGSTAGLAALLARANGNPVKAVYIYSR 114 Query: 139 RSNIYLAVPPDSPIQSVKDLRGKRVAIFKGTNAQLPINRVLEANSLQERDLRAINLDQAT 198 LAV +SP++S+ +L+GK++A KGT+ L + R L N L++ D+ ++L A Sbjct: 115 PEWTALAVGKESPVKSINELKGKKIAATKGTDPYLFLLRALHENGLKKSDVEIVHLQHAD 174 Query: 199 TLAALSTKDIDAAFG-NINLLRLRDKNAARIVYSSKGGSPIFTTQSHVLVTDEFAQQYP 256 AAL + A G + +L + +R++Y + F T + V+D FA ++P Sbjct: 175 GRAALEQGRVAAWAGLDPHLAASELEAGSRLIYRNVN----FNTYGFLNVSDSFAARHP 229 >gi|300313870|ref|YP_003777962.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 323 Score = 71.6 bits (174), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 47/138 (34%), Positives = 74/138 (53%), Gaps = 3/138 (2%) Query: 76 GWVEEEFKADGIKVEWFFFKGAGPAVNEALSNKQLDFAFQGDLPSIVAKSAGLKTRLILA 135 G +E+ + G V+WF F AGP + EAL+ +D D PS+ A ++G+ + A Sbjct: 54 GKLEQALQPQGWSVKWFEF-AAGPQLTEALNANAIDLGHAADTPSVFANASGVNAVYLGA 112 Query: 136 TG-VRSNIYLAVPPDSPIQSVKDLRGKRVAIFKGTNAQLPINRVLEANSLQERDLRAINL 194 I + V +SPI+SV DL+GK+VA +G N Q + + LE L RD+ + + Sbjct: 113 EQPYPKGIGIFVAQESPIRSVADLKGKKVATGRGWNVQFLLLKALEEVGLSYRDIEPVYV 172 Query: 195 DQATTL-AALSTKDIDAA 211 A + AA + ++DAA Sbjct: 173 TNAADVRAAFQSGNVDAA 190 >gi|300310977|ref|YP_003775069.1| alkanesulfonates ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 327 Score = 66.2 bits (160), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 93/185 (50%), Gaps = 15/185 (8%) Query: 29 VGAGAAILGLQARAANKPAIVRIGVAQPGIGNPPQFSGSSAAVANAKGWVEEEFKADGIK 88 +GA LG A + ++RIG Q + ++ + A G +E+ + G++ Sbjct: 25 LGALTIALGASPVQAQETKLLRIGY---------QKAANTLVLLKAHGTLEKRLQPLGVE 75 Query: 89 VEWFFFKGAGPAVNEALSNKQLDFAFQGDLPSIVAKSAG---LKTRLILATGVRSNIYLA 145 V+W F AGP + EAL+ +DF + G+ P + A++AG + T + T L Sbjct: 76 VKWAEF-AAGPQLLEALNVGSVDFGYVGEAPPVFAQAAGADFVYTAYEIPTPDAEG--LL 132 Query: 146 VPPDSPIQSVKDLRGKRVAIFKGTNAQLPINRVLEANSLQERDLRAINLDQATTLAALST 205 V +SPI+SV +L+GK++A KG++ + +L+ LQ D++ + L A AA Sbjct: 133 VQKNSPIKSVAELKGKKIAFNKGSDVHWLVVALLKKAGLQYSDIQPVYLAPADARAAFER 192 Query: 206 KDIDA 210 +DA Sbjct: 193 GAVDA 197 >gi|300310915|ref|YP_003775007.1| alkanesulfonates ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 336 Score = 63.5 bits (153), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/194 (27%), Positives = 93/194 (47%), Gaps = 6/194 (3%) Query: 64 FSGSSAAVANAKGWVEEEFKADGIKVEWFFFKGAGPAVNEALSNKQLDFAFQGDLPSIVA 123 + + ++ A G +E+ G V+W F AGP EAL +DF G+ P I A Sbjct: 57 YQKGALSLIRAHGVLEQRLAPLGATVKWVEF-SAGPVQLEALGAGSIDFGDVGEAPPIFA 115 Query: 124 KSAGLKTRLILATGVRSNIY-LAVPPDSPIQSVKDLRGKRVAIFKGTNAQLPINRVLEAN 182 ++AG + AT R + + V DS +Q + L+GKR+A+ KG+N + ++LE + Sbjct: 116 QAAGTPLVYVGATVPRPYVEAVLVKDDSELQRPQQLKGKRIALNKGSNVHYFLVKLLEKH 175 Query: 183 SLQERDLRAINLDQATTLAALSTKDIDA-AFGNINLLRLRDKNAARIVYSSKGGSPIFTT 241 L+ D+ + L A AA +DA A L + ARI+ + G + Sbjct: 176 GLKYGDVTPVWLAPADARAAFERGAVDAWAIWEPYLAAAQQGLKARILADADG---VVKN 232 Query: 242 QSHVLVTDEFAQQY 255 +++ T ++A+ + Sbjct: 233 RAYYFSTRDYARDH 246 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.135 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 813,320 Number of extensions: 33248 Number of successful extensions: 139 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 136 Number of HSP's successfully gapped: 6 Length of query: 307 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 222 Effective length of database: 1,217,395 Effective search space: 270261690 Effective search space used: 270261690 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)