BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0132.0008.p (886 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313825|ref|YP_003777917.1| methyl-accepting chemotaxis tra... 674 0.0 gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis sen... 467 e-132 gi|300313821|ref|YP_003777913.1| histidine ammonia-lyase [Herbas... 437 e-123 gi|300310309|ref|YP_003774401.1| methyl-accepting chemotaxis tra... 425 e-120 gi|300309601|ref|YP_003773693.1| methyl-accepting chemotaxis tra... 399 e-112 >gi|300313825|ref|YP_003777917.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 598 Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/490 (73%), Positives = 427/490 (87%), Gaps = 4/490 (0%) Query: 397 EGTQAAYEEI----RKQIPAAGKAVVTKPYTDVVTKKPMVSFTAQVRKDGVLQGVVAAAV 452 EG A Y+ KQ AAGK V+TKPYTDV TKKPMVSFTA V ++G GVVAAA+ Sbjct: 109 EGLPAGYDPTARPWYKQAVAAGKPVLTKPYTDVATKKPMVSFTAPVMQNGQRAGVVAAAM 168 Query: 453 FLDGVSNVVKAVHPTPASFAFLVDRDGMMLAHPDAQWINKPVKDWNPELTAERLNSLAGN 512 FLDGVS+VV+++HPTPASFAFLVDRDG+MLAHPD QW+NKP K+WN ELT ERLN+LA + Sbjct: 169 FLDGVSDVVRSIHPTPASFAFLVDRDGLMLAHPDGQWVNKPAKEWNAELTPERLNALAAD 228 Query: 513 DASKEIVLNGAAKLVQAIAVKDTEWTLLVAIDKADVNAGMRHATQSSLIAIVLVAALAAL 572 D + E++L GAAKLV+ + +K TEWTL++A+DKADV AG+R+A++S+LIA+VLVA +AA Sbjct: 229 DKASEVMLEGAAKLVKGVPIKGTEWTLMLAMDKADVTAGLRNASRSALIALVLVALVAAG 288 Query: 573 ILRLITAAVFRRLSQVRNAMDSIGSGNGDLTMRLPEDGKDEVTQIARSFNVFVQKITTIL 632 I+ LIT AVF+RLS+VR AMD++ SGNGDLT+RL EDG DEVTQI+RSFN FV +IT IL Sbjct: 289 IMSLITTAVFQRLSRVRRAMDNLSSGNGDLTLRLTEDGSDEVTQISRSFNTFVNQITGIL 348 Query: 633 QEIRHTSDAVKVSSSEIASGNLDLSGRTEQQAGALEETASAMEELTSTVKQNSDNARQAN 692 Q++R +SD VK+SS+EIA+GN DLS RTEQQAGALEETASAMEELTSTV+QNS+NAR+AN Sbjct: 349 QDVRRSSDTVKISSTEIATGNQDLSARTEQQAGALEETASAMEELTSTVQQNSENARRAN 408 Query: 693 QLALAASAIAKEGGEVVGNVVATMEAINQSSRQIVDIIGVIDGIAFQTNILALNAAVEAA 752 +LA AS IA +GGEVVGNVV+TMEAIN SSRQI DII VIDGIAFQTNILALNAAVEAA Sbjct: 409 ELAGNASKIAAQGGEVVGNVVSTMEAINASSRQIADIITVIDGIAFQTNILALNAAVEAA 468 Query: 753 RAGEQGRGFAVVASEVRSLAQRSAQAAKEIKVLIDSSVSKVSDGGLLVEKAGQTMVEIVD 812 RAGEQGRGFAVVASEVRSLAQRSAQAAKEIKVLIDSSVSKV+DGG+LV +AGQTM +IV Sbjct: 469 RAGEQGRGFAVVASEVRSLAQRSAQAAKEIKVLIDSSVSKVADGGVLVTQAGQTMEQIVA 528 Query: 813 SVRNVSAIVSEIANASSEQSTGIEEINRAITHMDEATQQNAALVEQAAAAAQSLQDQATS 872 S+R+VS IVSEIA+AS+EQ+ GI+E+N AITH+DE TQQNAALVEQAAAAA+SLQD+A Sbjct: 529 SIRDVSVIVSEIAHASAEQNGGIQEVNLAITHIDEGTQQNAALVEQAAAAARSLQDEAHR 588 Query: 873 LAAIVGGFKM 882 L+ +VGGFKM Sbjct: 589 LSVLVGGFKM 598 >gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 684 Score = 467 bits (1201), Expect = e-132, Method: Compositional matrix adjust. Identities = 278/475 (58%), Positives = 340/475 (71%), Gaps = 3/475 (0%) Query: 408 KQIPAAGKAVVTKPYTDVVTKKPMVSFTAQVRKDGVLQGVVAAAVFLDGVSNVVKAVHPT 467 KQ AGK V+T PY D T K +V+F V LQ V+ + V LD V V + PT Sbjct: 122 KQAVEAGKPVLTAPYVDATTGKLVVTFAEPVGDKSNLQAVLGSDVQLDNVVRTVAGIKPT 181 Query: 468 PASFAFLVDRDGMMLAHPDAQWINKPVKDWNPELTAERLNSLAGNDASKEIVLNGAAKLV 527 P+SFAF+V +DG+++ HP+ + KPV + L+A+ SLAG + G L+ Sbjct: 182 PSSFAFIVGKDGVIITHPNKELALKPVSSLDQTLSAQ---SLAGMKQGGSATIGGIRYLL 238 Query: 528 QAIAVKDTEWTLLVAIDKADVNAGMRHATQSSLIAIVLVAALAALILRLITAAVFRRLSQ 587 + +T+W+L+VA+D + + S + VL +A++L + RRL Sbjct: 239 FTQPIANTDWSLVVALDYREATHAIGALMTLSTVLAVLAIVASAILLSYTITRLLRRLGV 298 Query: 588 VRNAMDSIGSGNGDLTMRLPEDGKDEVTQIARSFNVFVQKITTILQEIRHTSDAVKVSSS 647 VRNAM+ I SG+GDLT RL GKDE+ QI+R+FN F KI+ L +IR S++VKVSSS Sbjct: 299 VRNAMEEIASGDGDLTRRLDTSGKDELAQISRAFNHFADKISRTLLDIRRASESVKVSSS 358 Query: 648 EIASGNLDLSGRTEQQAGALEETASAMEELTSTVKQNSDNARQANQLALAASAIAKEGGE 707 EIASGN+DLS RTEQQAG+LEETASAMEELTSTVKQN+DNARQANQLA++AS +A GG+ Sbjct: 359 EIASGNMDLSARTEQQAGSLEETASAMEELTSTVKQNADNARQANQLAVSASDVAVHGGQ 418 Query: 708 VVGNVVATMEAINQSSRQIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASE 767 VVG VVATM +IN+SSR+IVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASE Sbjct: 419 VVGQVVATMSSINESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASE 478 Query: 768 VRSLAQRSAQAAKEIKVLIDSSVSKVSDGGLLVEKAGQTMVEIVDSVRNVSAIVSEIANA 827 VRSLAQRSA AAKEIK LID SV KV G LV +AG TM E+V SVR V+ IV EI+ A Sbjct: 479 VRSLAQRSATAAKEIKGLIDDSVQKVETGSQLVAQAGSTMEEVVSSVRRVTDIVGEISAA 538 Query: 828 SSEQSTGIEEINRAITHMDEATQQNAALVEQAAAAAQSLQDQATSLAAIVGGFKM 882 S EQS+GI E+ A+ MDEATQQNAALVEQAAAAA+SLQ+QA LAA+V GFK+ Sbjct: 539 SQEQSSGITEVGNAVNQMDEATQQNAALVEQAAAAAKSLQEQAAHLAAVVAGFKL 593 >gi|300313821|ref|YP_003777913.1| histidine ammonia-lyase [Herbaspirillum seropedicae SmR1] Length = 542 Score = 437 bits (1123), Expect = e-123, Method: Compositional matrix adjust. Identities = 226/251 (90%), Positives = 238/251 (94%), Gaps = 3/251 (1%) Query: 1 MTTITIDGFNLNAAQVVSVSRGANGTYAKVALADSSRAALKQSRDFIESTWMHDEAPMMY 60 M+TITIDGFNL AAQVVSV+R + KVALADSSRAALKQSRD+IESTWMHDEAPMMY Sbjct: 1 MSTITIDGFNLTAAQVVSVARAP---HLKVALADSSRAALKQSRDYIESTWMHDEAPMMY 57 Query: 61 SFNTGVGLLKDTRIKVEHIELFQTQLIKAHSAGIGEPFSEEVSRATMLLRANAFASNYSA 120 SFNTGVGLLKDTRIKVEHIELFQTQLI+AHSAGIGE FSEEVSRATMLLRANAFASNYSA Sbjct: 58 SFNTGVGLLKDTRIKVEHIELFQTQLIRAHSAGIGEAFSEEVSRATMLLRANAFASNYSA 117 Query: 121 PRVEVVDRLLAFLNAGIHPIMPQKGSVGASGDLAPLAYLAAAIVGFDEAEVMYQGKRMSA 180 PRVEVVDRLLAF+NAGIHPIMPQKGSVGASGDLAPLAYLAAAI GFDEAEVMYQG+RM A Sbjct: 118 PRVEVVDRLLAFINAGIHPIMPQKGSVGASGDLAPLAYLAAAIAGFDEAEVMYQGQRMRA 177 Query: 181 PDAITQAGIGPVKFDLKAKDASALINGCTASLAVAVLAAHDSRNLLTDACVSLGLTLEAM 240 +AI QAGIGPVKFDLKAKDASALINGCTASLAVA+LAAHD+R+LLTDAC+SLGLTLEAM Sbjct: 178 TEAIEQAGIGPVKFDLKAKDASALINGCTASLAVAILAAHDARHLLTDACLSLGLTLEAM 237 Query: 241 RAEMSAFDARI 251 RAEMSAFD RI Sbjct: 238 RAEMSAFDPRI 248 Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 46/54 (85%), Positives = 48/54 (88%) Query: 360 KAATVVANTQYIVGVEMLLAAQGLTMTEELLKDFVLGEGTQAAYEEIRKQIPAA 413 KA TVV NTQYIVGVEMLLAAQ LTMTE LLKDFVLG+GTQAAY EIR+QIPA Sbjct: 454 KAMTVVQNTQYIVGVEMLLAAQALTMTEALLKDFVLGQGTQAAYAEIRRQIPAC 507 >gi|300310309|ref|YP_003774401.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 625 Score = 425 bits (1093), Expect = e-120, Method: Compositional matrix adjust. Identities = 249/476 (52%), Positives = 325/476 (68%), Gaps = 1/476 (0%) Query: 408 KQIPAAGKAVVTKPYTDVVTKKPMVSFTAQVRKDGVLQGVVAAAVFLDGVSNVVKAVHPT 467 +Q + V+T PYT T K +V+F V KDG + V AA V LD V V A+ PT Sbjct: 144 QQAAKTSEPVLTAPYTSASTGKLLVTFAQSVSKDGQVAAVAAADVLLDTVVADVVAIKPT 203 Query: 468 PASFAFLVDRDGMMLAHPDAQWINKPVKDWNPELTAERLNSLAGNDASKEIVLNGAAKLV 527 P S+AFL D G ++AHP+ + KP+ D + +T + L+ +++ L+G +++ Sbjct: 204 PNSYAFLADLSGKIIAHPNDKLRLKPLADLDAAITPQTLDEAMRTGVHQDVALDGRRQML 263 Query: 528 QAIAVKDTEWTLLVAIDKADVNAGMRHATQSSLIAIVLVAALAALILRLITAAVFRRLSQ 587 V T+W L+VA+D+AD A + SS + VLV LAAL+L + + + RL+ Sbjct: 264 FVARVGGTDWLLVVALDRADALASLSAMLVSSGVMAVLVTVLAALVLGALISRLLGRLTV 323 Query: 588 VRNAMDSIGSGNGDLTMRLPEDGK-DEVTQIARSFNVFVQKITTILQEIRHTSDAVKVSS 646 V+ A++ I G+GDLT RL G+ DE+ +I +FN FV KI ++ +IR S + +S Sbjct: 324 VQGALEEIADGDGDLTRRLDTHGRSDELGRIGAAFNRFVDKIEHVMIDIRDASHTIHAAS 383 Query: 647 SEIASGNLDLSGRTEQQAGALEETASAMEELTSTVKQNSDNARQANQLALAASAIAKEGG 706 +IASGN+DLS RTE QA +LE+TA+AME+LTS+V+ N+DNA QANQL+ +AS IA +GG Sbjct: 384 RDIASGNMDLSQRTESQASSLEQTAAAMEQLTSSVRHNADNAMQANQLSQSASQIATQGG 443 Query: 707 EVVGNVVATMEAINQSSRQIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAS 766 +V VV TM IN SS++IVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAS Sbjct: 444 TMVEQVVQTMNGINASSQKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAS 503 Query: 767 EVRSLAQRSAQAAKEIKVLIDSSVSKVSDGGLLVEKAGQTMVEIVDSVRNVSAIVSEIAN 826 EVRSLAQRSA AAKEIKVLI SV +V G V +AG T+ +VDSV+ VS +V+EI Sbjct: 504 EVRSLAQRSATAAKEIKVLITDSVGQVQAGEDTVAQAGATIRSVVDSVQKVSDVVAEITA 563 Query: 827 ASSEQSTGIEEINRAITHMDEATQQNAALVEQAAAAAQSLQDQATSLAAIVGGFKM 882 AS EQS GI + N A+ HMD+ TQQNAALVEQAAA AQSLQ+QA LA IV F++ Sbjct: 564 ASREQSQGINQANDAVAHMDQTTQQNAALVEQAAAGAQSLQEQAERLAGIVALFRL 619 >gi|300309601|ref|YP_003773693.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 399 bits (1024), Expect = e-112, Method: Compositional matrix adjust. Identities = 228/475 (48%), Positives = 328/475 (69%), Gaps = 2/475 (0%) Query: 408 KQIPAAGKAVVTKPYTDVVTKKPMVSFTAQVRKDGVLQGVVAAAVFLDGVSNVVKAVHPT 467 K + AGK V PY + +V+ V +DGVL+ VV V LD V +K++HPT Sbjct: 124 KGVLQAGKPVAL-PYVST-SGLLLVALARPVMRDGVLKAVVVGDVALDSVVENIKSIHPT 181 Query: 468 PASFAFLVDRDGMMLAHPDAQWINKPVKDWNPELTAERLNSLAGNDASKEIVLNGAAKLV 527 P+SF LV++ G ++AHPDAQ K + PE + + + IV++G KLV Sbjct: 182 PSSFGMLVEQGGRIIAHPDAQLRFKQASELAPEFSDLNVANAGPGQPPVHIVVDGREKLV 241 Query: 528 QAIAVKDTEWTLLVAIDKADVNAGMRHATQSSLIAIVLVAALAALILRLITAAVFRRLSQ 587 + AV T+W ++VAID+ + +AG+R SSL+++V V A+LI +TA FRRL Q Sbjct: 242 RVQAVPGTDWNIVVAIDQQEASAGVRALLASSLLSLVAVVIAASLIGAAVTATAFRRLGQ 301 Query: 588 VRNAMDSIGSGNGDLTMRLPEDGKDEVTQIARSFNVFVQKITTILQEIRHTSDAVKVSSS 647 + AM +IGSG+GDLT RLP+ G+DEV IA+SFN FV K+ +++++IR + V+V+S Sbjct: 302 ISAAMTAIGSGSGDLTQRLPDHGRDEVAIIAQSFNAFVAKLQSVMRDIRDAGETVRVASD 361 Query: 648 EIASGNLDLSGRTEQQAGALEETASAMEELTSTVKQNSDNARQANQLALAASAIAKEGGE 707 EIA+ N DLS RTE A +LE+TA++M E+++TV +++ A +A+Q + AA+ IA +GG+ Sbjct: 362 EIAAANHDLSVRTESAAASLEQTAASMAEISATVDRSATAAHEADQRSSAATGIASQGGK 421 Query: 708 VVGNVVATMEAINQSSRQIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASE 767 VV + VATM I + S QI DII VIDGIAFQTNILALNAAVE+ARAGEQGRGFAVVA E Sbjct: 422 VVSDAVATMGEIEKVSAQIGDIISVIDGIAFQTNILALNAAVESARAGEQGRGFAVVAHE 481 Query: 768 VRSLAQRSAQAAKEIKVLIDSSVSKVSDGGLLVEKAGQTMVEIVDSVRNVSAIVSEIANA 827 VR+LAQRSA AA+E+K L+++++S+V+ G V +AG TM +IV +V + +++IA Sbjct: 482 VRNLAQRSAGAAREVKDLVEATISRVAAGSQQVRQAGGTMRDIVTHTDDVQSAIADIART 541 Query: 828 SSEQSTGIEEINRAITHMDEATQQNAALVEQAAAAAQSLQDQATSLAAIVGGFKM 882 ++EQ+ GI+E+N+A+ +D QQNAALVE++AAA+ +LQ QA LAA + F++ Sbjct: 542 TTEQTRGIQEVNQAVIQLDGMVQQNAALVEESAAASSTLQQQANVLAATIARFRI 596 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.129 0.352 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,285,718 Number of extensions: 89113 Number of successful extensions: 631 Number of sequences better than 1.0e-08: 72 Number of HSP's gapped: 428 Number of HSP's successfully gapped: 74 Length of query: 886 Length of database: 1,619,870 Length adjustment: 94 Effective length of query: 792 Effective length of database: 1,174,780 Effective search space: 930425760 Effective search space used: 930425760 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 135 (56.6 bits)