BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0132.0004.p (182 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312554|ref|YP_003776646.1| transcription regulator protein... 291 2e-80 gi|300313281|ref|YP_003777373.1| LysR family transcription regul... 84 7e-18 gi|300310448|ref|YP_003774540.1| transcription regulator protein... 71 4e-14 gi|300314079|ref|YP_003778171.1| LysR family transcription regul... 71 6e-14 gi|300310812|ref|YP_003774904.1| LysR family transcription regul... 69 3e-13 >gi|300312554|ref|YP_003776646.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 314 Score = 291 bits (745), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 143/152 (94%), Positives = 147/152 (96%) Query: 1 MSRLPDHLDIHLIRILYLLLCEKNVSRVALKLNQPQPSISASLRKLRELTGDPLLVRGAR 60 MSRLPDHLD+HLIRILYLLLCEKNVSRVALKLNQPQPSISASLRKLRELTGDPLLVRGAR Sbjct: 1 MSRLPDHLDLHLIRILYLLLCEKNVSRVALKLNQPQPSISASLRKLRELTGDPLLVRGAR 60 Query: 61 GMVPTQHGESLLKPAKRILDETERLFVPKTAFVPQEEARTFHIAAPDYMNTPFFTEVIAR 120 GMVPTQHGESLLKPAKRILDETERLF+PKT FVPQEE R FHIAAPDYMNTPFFTEVIAR Sbjct: 61 GMVPTQHGESLLKPAKRILDETERLFIPKTEFVPQEEERIFHIAAPDYMNTPFFTEVIAR 120 Query: 121 LRRESPKSHIVIHALGPETDYVRLLSDGELDL 152 LRRESP+S IVIHALGP+TDYVR LSDGELDL Sbjct: 121 LRRESPRSRIVIHALGPDTDYVRRLSDGELDL 152 >gi|300313281|ref|YP_003777373.1| LysR family transcription regulator [Herbaspirillum seropedicae SmR1] Length = 323 Score = 84.0 bits (206), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 48/146 (32%), Positives = 74/146 (50%), Gaps = 1/146 (0%) Query: 7 HLDIHLIRILYLLLCEKNVSRVALKLNQPQPSISASLRKLRELTGDPLLVRGARGMVPTQ 66 + D++L+ I + E++VS A KL+ QP++S +L KLR GDPL V+ RGM PT Sbjct: 3 NFDLNLLPIALAVFEERSVSAAARKLDMSQPAVSVALNKLRSALGDPLFVKTGRGMQPTP 62 Query: 67 HGESLLKPAKRILDETERLFVPKTAFVPQEEARTFHIAAPDYMNTPFFTEVIARLRRESP 126 SL+ P + IL + F P + F +A D ++ R+R E+P Sbjct: 63 RAVSLIGPTREILQRVHAEVLSSDQFTPATTTKRFVLALSDIGELMLLPRLLERIRDEAP 122 Query: 127 KSHIVIHALGPETDYVRLLSDGELDL 152 + +V + P + V L GE+DL Sbjct: 123 HASVVTVTMAP-AELVAALESGEVDL 147 >gi|300310448|ref|YP_003774540.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 306 Score = 71.2 bits (173), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 47/148 (31%), Positives = 68/148 (45%), Gaps = 1/148 (0%) Query: 5 PDHLDIHLIRILYLLLCEKNVSRVALKLNQPQPSISASLRKLRELTGDPLLVRGARGMVP 64 P +D++L+ + + E+ +S VA +L QP++S +L +LR D L VR A+GM P Sbjct: 6 PRDIDLNLLVVFQEVFQERQISSVARRLGLSQPAVSNALARLRRSFEDELFVRTAQGMQP 65 Query: 65 TQHGESLLKPAKRILDETERLFVPKTAFVPQEEARTFHIAAPDYMNTPFFTEVIARLRRE 124 T E L +P L + R + F PQ AR F IA D F +I R Sbjct: 66 TPFAEQLAEPVAAALQQVARALNLQEGFAPQTSARRFTIAMTDVGEVYFMPALIEACARC 125 Query: 125 SPKSHIVIHALGPETDYVRLLSDGELDL 152 +P I G D + G +DL Sbjct: 126 APGVSISTVRAG-AIDLKSEMESGRVDL 152 >gi|300314079|ref|YP_003778171.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 319 Score = 70.9 bits (172), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 80/159 (50%), Gaps = 7/159 (4%) Query: 8 LDIHLIRILYLLLCEKNVSRVALKLNQPQPSISASLRKLRELTGDPLLVRGARGMVPTQH 67 LD++L+R+ ++ E+N++R A L QP++S +LR+LR+ D L++R A G+ PT Sbjct: 6 LDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTLNDDLVIRTAHGVKPTPR 65 Query: 68 GESLLKPAKRILDETERLFVPKTAFVPQEEARTFHIAAPDYMNTPFFTEVIARLRRESPK 127 E L +R L E E + P++ F TF +A D + ++ + R++P+ Sbjct: 66 AEELWPTVRRALSELEAVIAPES-FDISRAQNTFRMAMVDATAALWLPSLVRTIMRDAPR 124 Query: 128 SHIVIHALGPETDYVRLLSDGELDL-----PGRRKCLPD 161 I + L LL G++DL PG L D Sbjct: 125 IKIRMMPLTTRDPRAMLLR-GDIDLAVGFFPGVTAQLAD 162 >gi|300310812|ref|YP_003774904.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 311 Score = 68.6 bits (166), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 3/158 (1%) Query: 9 DIHLIRILYLLLCEKNVSRVALKLNQPQPSISASLRKLRELTGDPLLVRGARGMVPTQHG 68 D++L++ ++ ++++ A +L+ QP++S +LR+LRE+ DPL VR MVPT+ Sbjct: 10 DLNLLKTFIVIWELRSLTAAAERLHLTQPAVSHALRRLREMFDDPLFVRSTSAMVPTETA 69 Query: 69 ESLLKPAKRILDETERLFVPKTAFVPQEEARTFHIAAPDYMNTPFFTEVIARLRRESPKS 128 L +P R LD + F P RTFH+ D + ++ L +P Sbjct: 70 IRLHEPIARALDILQEALHTHAQFDPATATRTFHLVMSDMSCSHVLPLLMEELAHAAPHV 129 Query: 129 HIVIHALGPETDYVRLLSDGELDLP-GRRKCLPDKDCR 165 I + + E + + +G++DL G LP+ DC+ Sbjct: 130 SIEVQQMAME-NLGAAMRNGDVDLAFGYLPGLPE-DCQ 165 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.139 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 578,171 Number of extensions: 23212 Number of successful extensions: 105 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 105 Number of HSP's successfully gapped: 9 Length of query: 182 Length of database: 1,619,870 Length adjustment: 80 Effective length of query: 102 Effective length of database: 1,241,070 Effective search space: 126589140 Effective search space used: 126589140 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 127 (53.5 bits)