BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0132.0003.p
         (467 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312918|ref|YP_003777010.1| xanthine/uracil permease [Herba...   119   7e-28

>gi|300312918|ref|YP_003777010.1| xanthine/uracil permease
           [Herbaspirillum seropedicae SmR1]
          Length = 431

 Score =  119 bits (297), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 134/467 (28%), Positives = 227/467 (48%), Gaps = 70/467 (14%)

Query: 2   TTQSPQGHPV--DERLPILKLAALGMQHVLVMYAGAIAVPLIVGGALNLPKSEIAYLISA 59
           +T   QG  +  DERLP  +  A+G+QHV+ M+   +  PL++G   NL           
Sbjct: 14  STNDGQGAVIAADERLPAPQTLAMGVQHVVAMFGSTVLAPLLMGFDPNLA---------- 63

Query: 60  DLFCCGLVTIIQSLGIWKFGIRMPVMMGVTFAAVGPMVAM----ANNPSLSILHIYGAVI 115
            +   G+ T++  L +   G R+P  +G +F+ +G ++A+     + P+ ++    G +I
Sbjct: 64  -ILMSGVGTLLFFLLV---GGRVPSYLGSSFSFIGLVIAVTGYAGSGPNTNLGVALGGII 119

Query: 116 AAG-----IFCILASPYMSKLMRYFPPVVTGTVITVIGVSLMGVGINWAAGGQPIIGRLV 170
           A G     I  I+A      +    PPVVTG V+ VIG++L            PI  + V
Sbjct: 120 ACGAVYAVIGLIVAGVGTRWIESLMPPVVTGAVVAVIGLNL-----------APIAVKGV 168

Query: 171 DGVFVKIPNPDYGSPLSLAIAAVVLVSILLITKYVKGFIANISVLMGMIVGFVI------ 224
            G         + S ++LA     ++ +  +  + +G +  + +L+G+++ +V+      
Sbjct: 169 SG-------SSFDSWMALA----TILCVGGVAVFTRGMLQRLLILVGLLLAYVLYAVLTN 217

Query: 225 ALSLGK-INFDGLGATDWFAMIKPFHYGWPQFDAGSIISMCLVMIVTMIESTGMFMALGD 283
            L LGK I+F  +    WF +  P H+  P F AG++  +  V I+ + E+ G   A+  
Sbjct: 218 GLGLGKPIDFSTVANAAWFGV--P-HFAAPVFHAGAMALLAPVAIILVAENLGHIKAVSA 274

Query: 284 IVEKKVDDRTLARGLRVDGLGTVIGGIFNTFPYTSFSQNVGLVGVTGIRSRYVCVAAGVI 343
           +  + +D R + R    DGL T++ G       T++++N+G++ VT I S  V V A VI
Sbjct: 275 MTGQNLD-RYIGRAFVGDGLATMLSGSVGGTGVTTYAENIGVMAVTKIYSTLVFVVAAVI 333

Query: 344 LAAFGLFPKMAHVAASIPQFVLGGAGIVMFGMVAATGIKILA--KVDFNTNRNNLFIVAI 401
               G  PK   V  +IP  VLGG  IV+FG++  +G +I    KVDF +N  NL + A+
Sbjct: 334 AILLGFSPKFGAVILTIPGAVLGGVSIVVFGLITISGARIWVENKVDF-SNNTNLIVAAV 392

Query: 402 SIGVGMIPIVAPTFFDKMPGFLSTVFHSGILLASTMAVVLNVFFNGR 448
           ++ +G     A  F  K+ GF       GI  A+  A++L+     R
Sbjct: 393 TLVLG-----AGDFTLKLGGFA----LGGIGTATFGAIILHALLKRR 430


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.143    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,457,294
Number of extensions: 62635
Number of successful extensions: 299
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 295
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 378
Effective length of database: 1,198,455
Effective search space: 453015990
Effective search space used: 453015990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 132 (55.5 bits)