BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0131.0011.p
         (555 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311995|ref|YP_003776087.1| malonate decarboxylase alpha su...  1053   0.0  

>gi|300311995|ref|YP_003776087.1| malonate decarboxylase alpha
           subunit [Herbaspirillum seropedicae SmR1]
          Length = 555

 Score = 1053 bits (2723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/555 (90%), Positives = 528/555 (95%)

Query: 1   MSATDHVWNRRQTNRNERLARASSALGNALEGKLLPAARIADLLYAVIESGDRVCLEGNN 60
           MS+++ VWN RQ NR +RLARA++ LG+ L+GK+ PA ++ADLLYAV+E+GDRVC+EGNN
Sbjct: 1   MSSSERVWNARQKNREQRLARATAVLGSQLQGKIAPADKLADLLYAVLENGDRVCVEGNN 60

Query: 61  QKQADFLSKALAGLDPARVHDLHMLFSVLALPEHLDVFEKGIASKLDFSFSGPQAGRLAK 120
           QKQADFL+K LA LDPARV+ LHMLFSVLALPEHLDVFEKGIA +LDFSFSGPQAGRLAK
Sbjct: 61  QKQADFLAKGLAALDPARVNGLHMLFSVLALPEHLDVFEKGIADRLDFSFSGPQAGRLAK 120

Query: 121 LASAGKLNIGAIHTYLELFGRYFVDLTPRVALVAAQAADRHGNLYTGPNTEDTPAIVEAT 180
           LASAGKLNIGAIHTYLELFGRYFVDLTPRVALVAAQAADRHGNLYTGPNTEDTPAI EAT
Sbjct: 121 LASAGKLNIGAIHTYLELFGRYFVDLTPRVALVAAQAADRHGNLYTGPNTEDTPAIAEAT 180

Query: 181 TFSSGIVIAQVNEIVDVLPRIDIPADWVSFVTKAPTPHYIEPLFTRDPAQISEIQVLMAM 240
            FSSGIVIAQVNEIVD LPR+DIPADWV F  KAPTPHYIEPLFTRDPAQISEIQVLMAM
Sbjct: 181 AFSSGIVIAQVNEIVDELPRVDIPADWVGFAIKAPTPHYIEPLFTRDPAQISEIQVLMAM 240

Query: 241 MAIKGIYAEYEVQRLNHGIGFDTAAIELILPTYGESLGLRGKICKHWALNPHPALIPAIE 300
           MAIKGIYAEY VQRLNHGIGFDTAAIELILPTY ESLGLRGKICKHWALNPHPALIPAIE
Sbjct: 241 MAIKGIYAEYGVQRLNHGIGFDTAAIELILPTYAESLGLRGKICKHWALNPHPALIPAIE 300

Query: 301 AGFVESVHSFGSELGMEDYIRARPDIFFIGPDGSMRSNRAFSQTAGHYACDMFIGSTLQI 360
           AGFVESVHSFGSELGMEDYIRARPDIFF+GPDGSMRSNRAFSQTAGHY CDMFIGSTLQI
Sbjct: 301 AGFVESVHSFGSELGMEDYIRARPDIFFVGPDGSMRSNRAFSQTAGHYGCDMFIGSTLQI 360

Query: 361 DLQGNSSTATLGRIAGFGGAPNMGADARGRRHASSAWLKAGQQARAGKNTIPRGQKLVVQ 420
           DLQGNSSTATLGRIAGFGGAPNMGADARGRRHAS AWLKAGQQARAG++TIPRGQKLVVQ
Sbjct: 361 DLQGNSSTATLGRIAGFGGAPNMGADARGRRHASEAWLKAGQQARAGRHTIPRGQKLVVQ 420

Query: 421 TVETFREHMQPAFVDRLDAWQLAEQANMPIPPVMIYGDDVTHILTEEGIANLLLCRTEEE 480
           TVETFREHMQPAFV+RLDAWQL EQA MPIPPVMIYGDDVTHILTEEGIANLLLCRTEEE
Sbjct: 421 TVETFREHMQPAFVERLDAWQLGEQAKMPIPPVMIYGDDVTHILTEEGIANLLLCRTEEE 480

Query: 481 REQAIRGVAGYTPVGLARDKRMVENLRDRGIIRRAEDLGIDKRLATRDLLAAKNMKDLVR 540
           REQAIRGVAGYT VG+ RD+RMVENLRDRGIIRRAEDLGIDKR+ATRDLLAAKNMKDLVR
Sbjct: 481 REQAIRGVAGYTAVGMGRDRRMVENLRDRGIIRRAEDLGIDKRMATRDLLAAKNMKDLVR 540

Query: 541 TSGGLYNPPKRFRNW 555
            SGGLYNPPKRFRNW
Sbjct: 541 ASGGLYNPPKRFRNW 555


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,800,861
Number of extensions: 78608
Number of successful extensions: 249
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 249
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 465
Effective length of database: 1,193,720
Effective search space: 555079800
Effective search space used: 555079800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)