BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0131.0009.p
         (190 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311997|ref|YP_003776089.1| TRAP-type C4-dicarboxylate tran...   276   7e-76

>gi|300311997|ref|YP_003776089.1| TRAP-type C4-dicarboxylate
           transport system small permease [Herbaspirillum
           seropedicae SmR1]
          Length = 192

 Score =  276 bits (706), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 147/186 (79%), Positives = 164/186 (88%), Gaps = 1/186 (0%)

Query: 1   MSHGFEMQPQAKPAGGDISANAVVAGLHHALQKFNKLAVFLAMIALMLTSIILTYSVVVR 60
           MSHGFEM P A     ++ A+A VA L   L+ ++++AVFL MIAL++TS ILTYSVVVR
Sbjct: 1   MSHGFEM-PGAAATRPEVPASAPVAWLGAFLRGYHRVAVFLGMIALLVTSCILTYSVVVR 59

Query: 61  YFFHQPTDWQDEASVFMLVGVIFLCSAYVQSLRGHIGIEALAGFLSPRANQVRMFIVDLI 120
           YFFHQPTDWQDEASVFMLVGVIFLCSAYVQSLRGHIGIEALAG LSP AN+VRMFIVD++
Sbjct: 60  YFFHQPTDWQDEASVFMLVGVIFLCSAYVQSLRGHIGIEALAGMLSPLANRVRMFIVDVV 119

Query: 121 SFVFCAFFAWKSWTLFHEAWVDGQTTSSTFAPPLWIPYSMMALGMTVLTLQLLVQVLTRI 180
           S +FCAFF WKSW LFHEAWV+GQTTSSTFAPPLWIPYS+MALGMT+LTLQLLVQVL RI
Sbjct: 120 SLLFCAFFTWKSWALFHEAWVEGQTTSSTFAPPLWIPYSLMALGMTMLTLQLLVQVLVRI 179

Query: 181 TGTVPA 186
           TGTVPA
Sbjct: 180 TGTVPA 185


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.137    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 556,060
Number of extensions: 18916
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 110
Effective length of database: 1,241,070
Effective search space: 136517700
Effective search space used: 136517700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 128 (53.9 bits)