BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0131.0007.p (234 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311999|ref|YP_003776091.1| GntR family transcription regul... 377 e-106 gi|300311599|ref|YP_003775691.1| transcription regulator protein... 89 2e-19 gi|300314040|ref|YP_003778132.1| transcription regulator protein... 80 2e-16 gi|300310738|ref|YP_003774830.1| transcription regulator protein... 72 4e-14 gi|300313534|ref|YP_003777626.1| GntR family transcription regul... 67 1e-12 >gi|300311999|ref|YP_003776091.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 222 Score = 377 bits (967), Expect = e-106, Method: Compositional matrix adjust. Identities = 182/221 (82%), Positives = 199/221 (90%) Query: 1 MDTPKKRSETLRESIEELIAVGKLAPGQHLDETVLAEQFGVSRTPIREALIQLASMGIIV 60 MDTPK R+E LRESIEELIAV KL+PGQHLDET LAE+FGVSRTPIREALIQLASMGI+ Sbjct: 1 MDTPKTRAEALRESIEELIAVSKLSPGQHLDETSLAEEFGVSRTPIREALIQLASMGIVE 60 Query: 61 MRPRRGAIVAEIGPQQLIEMFEVMAELEAMCGRLAARRMSAAEHASLMAAHQACKDARDA 120 MRPRRGAIVAEIGPQQLIEMFEVMAE EAMCGRLAARRM+ AEHA L+AAHQAC+ ARDA Sbjct: 61 MRPRRGAIVAEIGPQQLIEMFEVMAEFEAMCGRLAARRMTPAEHAELLAAHQACQAARDA 120 Query: 121 VDPDTYFYKNEDFHGQIYAGSHNAFLEEQARVLQRRLRPYRRLQLRVRDRLKRSYDEHEG 180 DPD YFY NE FH IYAGSHN FL +QAR L RRLRPYRRLQLRVRDRLK S+DEH+ Sbjct: 121 NDPDAYFYLNEAFHDHIYAGSHNGFLADQARALHRRLRPYRRLQLRVRDRLKSSFDEHQA 180 Query: 181 VVNAIIAGDSERTVELLRQHVMIQGQRFADLVASLHQLKIA 221 VV+AII+GD+E+TV+LLR+H+MIQGQRFADLVASLHQLK A Sbjct: 181 VVDAIISGDAEKTVDLLREHIMIQGQRFADLVASLHQLKSA 221 >gi|300311599|ref|YP_003775691.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 243 Score = 89.4 bits (220), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 69/204 (33%), Positives = 106/204 (51%), Gaps = 17/204 (8%) Query: 8 SETLRESIEELIAVGKLAPGQHLDETVLAEQFGVSRTPIREALIQLASMGIIVMRPRRGA 67 SE + I+ I G++APG + E LA +G+SR P+REA+ +L ++V P GA Sbjct: 18 SEHVFRKIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAIHRLEGQNLLVRVPHVGA 77 Query: 68 IVAEIGPQQLIEMFEVMAELEAMCGRLAARRMSAAEHASL---MAAHQACKDARDAVDPD 124 V + + L+E+F++ LE M RLAA+RMS AE L + H+ KD +A Sbjct: 78 RVVSLTLEGLVELFQIRESLEGMACRLAAQRMSRAELDELRRVLDTHE--KD--EAFQAG 133 Query: 125 TYFYKNE---DFHGQIYAGSHNAFLEEQARVLQRRL----RPYRRLQLRVRDRLKRSYDE 177 +Y+ E DFH +I S N L R+L L R YR R ++++ E Sbjct: 134 RGYYQQEGDYDFHYKIIQASGNQIL---TRILCGELYQLARMYRIQYSATPHRPRQAFAE 190 Query: 178 HEGVVNAIIAGDSERTVELLRQHV 201 H +++A+ GD E L+R+H+ Sbjct: 191 HHRILDALADGDGELADLLMRRHI 214 >gi|300314040|ref|YP_003778132.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 234 Score = 80.1 bits (196), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 66/227 (29%), Positives = 106/227 (46%), Gaps = 15/227 (6%) Query: 1 MDTPKKRSETLRESIEELIAVGKLAPGQHLDETVLAEQFGVSRTPIREALIQLASMGIIV 60 +D P + E + +I + I G LAP + + + LAEQ GVSR PI +A L G I Sbjct: 4 IDAPAQLIEQVYHAILDAICTGALAPNEKITQEGLAEQLGVSRQPILQAFQILKREGFIE 63 Query: 61 MRPRRGAIVAEIGPQQLIEMFEVMAELEAMCGRLAARRM-------SAAEHA--SLMAAH 111 R+G +V + PQ+L+++++V A L+ + R A + +A E A +L+ A Sbjct: 64 DAGRKGVMVTALDPQRLMQLYQVRAVLDGLAARSTAEQWKSDAALRAAGERAGRALIEAG 123 Query: 112 QACKDARDAVDPDTYFYKNEDFHGQIYAGSHNAFLEEQARVLQRRLRPYRR--LQLRVRD 169 +A D RD + DFH IY N + + + + +R L VR Sbjct: 124 RALADMRDL---SARILADMDFHQFIYRSCGNPMIGQTTALHWQHIRRAMGAILSSEVRS 180 Query: 170 RLKRSYDEHEGVVNAIIAGDSERTVELLRQHVMIQGQRFADLVASLH 216 L ++EHE ++ A++ G +L RQH A ++ S H Sbjct: 181 HLA-VWEEHEAILQAMLEGRPALADKLARQHAESAAAHLARVLTSAH 226 >gi|300310738|ref|YP_003774830.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 234 Score = 72.0 bits (175), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 58/183 (31%), Positives = 92/183 (50%), Gaps = 8/183 (4%) Query: 23 KLAPGQHLDETVLAEQFGVSRTPIREALIQLASMGIIVMRPRRGAIVAEIGPQQLIEMFE 82 +L PG + ET +A++ GVSRTP+R+AL +L G + + RRG V I +L +++ Sbjct: 25 RLLPGDNFTETEMAQRQGVSRTPLRDALFRLQREGYLEVGFRRGWKVCPIDFDRLDNLYD 84 Query: 83 VMAELE-AMCGRLAARRMSAAEHASLMAAHQACKDARDAVDPDTYFYKNEDFHGQIYAGS 141 + LE A +L ++ ++AE L A A DAR D +E FH + A + Sbjct: 85 LRIVLEMAALDKLCSQPEASAELTQLNAIWLAEPDARQ-TDAVKVAQLDEAFHTNLVAAA 143 Query: 142 HNAFLEEQARV---LQRRLRPYRRLQLRVRDRLKRSYDEHEGVVNAIIAGDSERTVELLR 198 N EE RV + ++R RRL + R+ +Y+EH ++ I + LLR Sbjct: 144 GN---EEMTRVHTEVTEKIRIVRRLDFLKKKRIDATYEEHGKILQLIAKRKATEAQILLR 200 Query: 199 QHV 201 H+ Sbjct: 201 AHI 203 >gi|300313534|ref|YP_003777626.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 249 Score = 67.4 bits (163), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 65/197 (32%), Positives = 88/197 (44%), Gaps = 2/197 (1%) Query: 6 KRSETLRESIEELIAVGKLAPGQHLDETVLAEQFGVSRTPIREALIQLASMGIIVMRPRR 65 K S + I E I +LAPG L E LA+ F VSRT +REAL L + GI+ + RR Sbjct: 8 KSSSQIAVRITEAILAKQLAPGTRLGEQQLADLFKVSRTQVREALTHLMARGIVTVSARR 67 Query: 66 GAIVAEIGPQQLIEMFEVMAELEAMCGRLAARRMSAAEHASLMAAHQACKDARDA-VDPD 124 G V E P Q E FE +E R A R + H A ++A A D Sbjct: 68 GWFVIEPTPAQAREAFEARRVIELGLLRQARLRPVGDTAIGQLREHIAREEAAIAGADVG 127 Query: 125 TYFYKNEDFHGQIYAGSHNAFLEEQARVLQRRLRPYRRLQLRVRDRLKRSYDEHEGVVNA 184 Y DFH + N+ L E R L R L + ++ + S EH +V A Sbjct: 128 ARSYLLGDFHVCLAECLGNSLLAETLRDLTARTTLTAMLH-QSSEQAEDSCSEHVLIVEA 186 Query: 185 IIAGDSERTVELLRQHV 201 + GD E+ +L+ H+ Sbjct: 187 LERGDLEQAEQLMHDHL 203 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.134 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 624,032 Number of extensions: 21278 Number of successful extensions: 109 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 100 Number of HSP's successfully gapped: 15 Length of query: 234 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 152 Effective length of database: 1,231,600 Effective search space: 187203200 Effective search space used: 187203200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)