BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0131.0003.p
         (284 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312103|ref|YP_003776195.1| N-acetyl-gamma-glutamyl-phospha...   325   2e-90
gi|300313142|ref|YP_003777234.1| N-acetyl-gamma-glutamyl-phospha...    68   9e-13

>gi|300312103|ref|YP_003776195.1| N-acetyl-gamma-glutamyl-phosphate
           reductase [Herbaspirillum seropedicae SmR1]
          Length = 309

 Score =  325 bits (834), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 162/245 (66%), Positives = 190/245 (77%)

Query: 36  ARARDAVAAIENPAVRVIDASSAHRTTAGWVYGFPEMDAGQAQRIATASRVTNPGCYPTG 95
           A AR+AVA I NP VRVIDASSAHRT+  WVYGFPEM AGQA+ IATA RV+NPGCYPTG
Sbjct: 63  AAAREAVAMISNPRVRVIDASSAHRTSPDWVYGFPEMAAGQAEAIATALRVSNPGCYPTG 122

Query: 96  AISLLRPLIEAGLVPRDYPVSVHAVSGYSGGGRPSVEQYEGPQGAQAPAFQVYGTALAHK 155
           AI+LLRPL++AGLVP DYP+++HAVSGYSGGGR  VEQYEG + A A  F  YG  L HK
Sbjct: 123 AIALLRPLVQAGLVPADYPLNIHAVSGYSGGGRAQVEQYEGAEAAHAAPFVTYGLGLQHK 182

Query: 156 HPPEMQRYTGLDHRPIFVPAYGAFRQGIVLTIPLELRLLASGVDGKQLHAALARHYAGAT 215
           HPPEMQ + GL  RP+FVP+YGAFRQGIVLTI L+ RLL +    ++L A L  HY GA 
Sbjct: 183 HPPEMQLHAGLSQRPLFVPSYGAFRQGIVLTIALQSRLLPAQASLERLRATLQAHYDGAH 242

Query: 216 HVRVIPLEETKTLTHLNPQALNGTNDMDLGVFINEEHGHVLLSAVFDNLGKGASGAAVQN 275
           +V V+   ++++ T L+P   N +N M LGVF +  HGH+LL AVFDNLGKGASGAAVQN
Sbjct: 243 YVTVLDAAQSESTTQLDPTRHNHSNQMSLGVFGHAGHGHILLCAVFDNLGKGASGAAVQN 302

Query: 276 LDLML 280
           LDLML
Sbjct: 303 LDLML 307


>gi|300313142|ref|YP_003777234.1| N-acetyl-gamma-glutamyl-phosphate
           reductase [Herbaspirillum seropedicae SmR1]
          Length = 345

 Score = 67.8 bits (164), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 115/272 (42%), Gaps = 42/272 (15%)

Query: 32  GXARARARDAVAAIENPAVRVIDASSAHRTT-----AGW--------------VYGFPEM 72
           G A A+A + VAA     V+VID ++  R         W               YG PE+
Sbjct: 78  GVAMAQAPELVAA----GVKVIDLAADFRMQDVAAFEKWYKLPHSCTDLLKEAAYGLPEL 133

Query: 73  DAGQAQRIATASRVTNPGCYPTGAISLLRPLIEAGLVPRDYPVSVHAVSGYSGGGRPSVE 132
           +    + I  A  V NPGCYPT       PL++AG++   + ++    SG SG GR +  
Sbjct: 134 NR---EAIRKARVVGNPGCYPTTMQLGYAPLLKAGVIDASHLIA-DCKSGVSGAGRKAEL 189

Query: 133 QYEGPQGAQAPAFQVYGTALAHKHPPE-MQRYTGLDHRPI---FVPAYGAFRQGIVLTIP 188
                + +    F+ YG +  H+H PE ++R + L    +   F P      +G+  T+ 
Sbjct: 190 SLLFSEASDN--FKAYGVS-GHRHSPETIERLSHLTSDKVGLLFTPHLVPMIRGMHSTLY 246

Query: 189 LELRLLASGVDGKQLHAALARHYAGATHVRVIPLEETKTLTHLNPQALNGTNDMDLGVFI 248
             L      +D   L A     Y     V V+P        H   +    +N + L V  
Sbjct: 247 ARL---TKEIDNAALQALFEDAYKDEPFVDVLPFG-----AHPETRTTRASNMLRLAVHR 298

Query: 249 NEEHGHVLLSAVFDNLGKGASGAAVQNLDLML 280
             +   V++  V DNL KGASG AVQ ++LM 
Sbjct: 299 PGDGDTVVVLVVQDNLVKGASGQAVQCMNLMF 330


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 993,523
Number of extensions: 44518
Number of successful extensions: 108
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 2
Length of query: 284
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 200
Effective length of database: 1,222,130
Effective search space: 244426000
Effective search space used: 244426000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)