BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0131.0001.p
         (212 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312001|ref|YP_003776093.1| HipA-like protein [Herbaspirill...   303   7e-84

>gi|300312001|ref|YP_003776093.1| HipA-like protein [Herbaspirillum
           seropedicae SmR1]
          Length = 446

 Score =  303 bits (776), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 142/192 (73%), Positives = 163/192 (84%)

Query: 7   RAAXENFLLIHRFDRDAGTATGRLHMEDFAQITGTPAAAKYAGTYAALGVVLLERSVKGE 66
           R     FLL+ RFDRDA T TGRLHMEDFAQ+TGT   AKY G+YAA+GVVLLERS +G 
Sbjct: 237 RNDASRFLLVQRFDRDAPTPTGRLHMEDFAQVTGTAPGAKYVGSYAAIGVVLLERSTRGV 296

Query: 67  EDLFELLRRIKVNELLGNFDAHLKNFSMLYRTPQAAELSPAYDIVAYSAYLAGHGHALAF 126
           ED++ELLRRIKVNELLGNFDAHLKNFS+LY TPQAA LSPAYDIVAY+AY+ G GHALAF
Sbjct: 297 EDVYELLRRIKVNELLGNFDAHLKNFSLLYHTPQAAALSPAYDIVAYAAYVGGDGHALAF 356

Query: 127 APGEKARQLLTPAVLRELANIWRIPEPKLQMVLVDTVERAMQSWPELLQSLPLSDTQRSR 186
            PG+K +QLLTPA+LR+LAN+WRIPEPKLQ VLVDTVERAM  WP L+ SLPL+D QR+R
Sbjct: 357 VPGQKGKQLLTPAILRQLANLWRIPEPKLQAVLVDTVERAMTQWPALIASLPLTDAQRTR 416

Query: 187 IRAHLDNNPSVI 198
           + +HLD N SV+
Sbjct: 417 LLSHLDANASVL 428


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.133    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 607,982
Number of extensions: 23428
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 1
Length of query: 212
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 131
Effective length of database: 1,236,335
Effective search space: 161959885
Effective search space used: 161959885
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)