BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0130.0022.p
         (94 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309981|ref|YP_003774073.1| two component response regulato...   144   2e-36
gi|300313818|ref|YP_003777910.1| two component transcription reg...    78   2e-16
gi|300313680|ref|YP_003777772.1| two component response regulato...    77   3e-16
gi|300312680|ref|YP_003776772.1| two component response regulato...    66   4e-13
gi|300312688|ref|YP_003776780.1| response regulator consisting o...    60   3e-11

>gi|300309981|ref|YP_003774073.1| two component response regulator
          protein [Herbaspirillum seropedicae SmR1]
          Length = 237

 Score =  144 bits (362), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 78/94 (82%), Positives = 79/94 (84%), Gaps = 7/94 (7%)

Query: 1  MRILLAEDDSVLADGLTRSLRHSGYAADCVKNGVEADSALSTQDFDLLILDLGLPKMSGL 60
          MRILLAEDDSVLADGLTRSLRHSGYAADCVKNGVEADSALSTQDFDLLILDLGLPKMSGL
Sbjct: 1  MRILLAEDDSVLADGLTRSLRHSGYAADCVKNGVEADSALSTQDFDLLILDLGLPKMSGL 60

Query: 61 EVLRRLRARNSPPPPLALRRPEPCLTPALSIRNR 94
          EVLRRLRARNS  P L        LT A S+  R
Sbjct: 61 EVLRRLRARNSRLPVL-------ILTAADSVEQR 87


>gi|300313818|ref|YP_003777910.1| two component transcription
          regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 224

 Score = 77.8 bits (190), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/78 (50%), Positives = 53/78 (67%)

Query: 1  MRILLAEDDSVLADGLTRSLRHSGYAADCVKNGVEADSALSTQDFDLLILDLGLPKMSGL 60
          MRILL ED   L+  L +++R +    +C  NG +ADS L TQD+ L+ILDL LP+M G+
Sbjct: 1  MRILLVEDHIELSRWLAKAMRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGM 60

Query: 61 EVLRRLRARNSPPPPLAL 78
          EVL+R+RAR +  P L L
Sbjct: 61 EVLKRMRARGNRTPVLIL 78


>gi|300313680|ref|YP_003777772.1| two component response regulator
          protein [Herbaspirillum seropedicae SmR1]
          Length = 218

 Score = 77.0 bits (188), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 37/76 (48%), Positives = 52/76 (68%)

Query: 1  MRILLAEDDSVLADGLTRSLRHSGYAADCVKNGVEADSALSTQDFDLLILDLGLPKMSGL 60
          MR+LL EDD ++ + + + LR  G+A D V++G  AD AL T+D+ +L+LDLGLP+  GL
Sbjct: 1  MRVLLVEDDPMVGEAVRKGLRQDGFAIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60

Query: 61 EVLRRLRARNSPPPPL 76
           VLR LR R +  P L
Sbjct: 61 AVLRTLRERGNAIPVL 76


>gi|300312680|ref|YP_003776772.1| two component response regulator
          protein [Herbaspirillum seropedicae SmR1]
          Length = 220

 Score = 66.2 bits (160), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 49/80 (61%), Gaps = 6/80 (7%)

Query: 1  MRILLAEDDSVLADGLTRSLRHSGYAADCVKNGVEADSALSTQDFD--LLILDLGLPKMS 58
          M +LL EDD VL DGL+R L   G+    V NG +A S    Q F+  +L+LD+GLP + 
Sbjct: 1  MNVLLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDALS----QRFNAAVLVLDIGLPGID 56

Query: 59 GLEVLRRLRARNSPPPPLAL 78
          G EVLRR+RA  +  P L L
Sbjct: 57 GFEVLRRMRAAGNNTPVLLL 76


>gi|300312688|ref|YP_003776780.1| response regulator consisting of
          a CheY-like receiver domain and a winged-helix
          DNA-binding domain-containing protein [Herbaspirillum
          seropedicae SmR1]
          Length = 222

 Score = 60.5 bits (145), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 48/78 (61%)

Query: 1  MRILLAEDDSVLADGLTRSLRHSGYAADCVKNGVEADSALSTQDFDLLILDLGLPKMSGL 60
          M++LL ED+  LA  L + L+   +  D   +G  AD  L  +++D+++LDL LPK+ G 
Sbjct: 1  MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60

Query: 61 EVLRRLRARNSPPPPLAL 78
           VLRRLR R++  P + L
Sbjct: 61 NVLRRLRERHNGVPVMIL 78


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.138    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 202,021
Number of extensions: 5682
Number of successful extensions: 103
Number of sequences better than 1.0e-08: 11
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 11
Length of query: 94
Length of database: 1,619,870
Length adjustment: 63
Effective length of query: 31
Effective length of database: 1,321,565
Effective search space: 40968515
Effective search space used: 40968515
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 123 (52.0 bits)