BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0130.0021.p
         (231 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309983|ref|YP_003774075.1| transmembrane protein [Herbaspi...   293   7e-81
gi|300313191|ref|YP_003777283.1| transmembrane protein [Herbaspi...   253   1e-68

>gi|300309983|ref|YP_003774075.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 242

 Score =  293 bits (751), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 151/223 (67%), Positives = 169/223 (75%), Gaps = 5/223 (2%)

Query: 8   SHFGLGGAMASMISTILMVALLAFAAMFIYRMFRRKSEANGNSNERPAYAANQGDYGNQT 67
           SHFGLGGA+ASMISTIL VAL+A A MF+ RMFRRKSEA+  +      A    D  + T
Sbjct: 20  SHFGLGGALASMISTILTVALIALAIMFVVRMFRRKSEASQPAPAWAGAAPQAADNASAT 79

Query: 68  PAIGSQLDAAQPKALQGNAFGGATAVGGTGGAAFEPTSYGIPADFDTVGFVRNAKTYFIR 127
           P IGS L     K  Q  A       GG  G A +  +YG+PA FDTVGFVRNAKTYFIR
Sbjct: 80  PQIGSML-----KTDQSAAAATQGGFGGGFGNAEQAPAYGVPAGFDTVGFVRNAKTYFIR 134

Query: 128 LQAAWDKGDANDIREFTTPEMFGELKMQLTERGASANHTDVVSLDADMLGVETVGNDYLA 187
           LQAAWDK D NDIREFTTPEMF EL++Q+ ERGA++N TDVVSLDA++LGVETVGNDYLA
Sbjct: 135 LQAAWDKADINDIREFTTPEMFAELRLQIQERGAASNQTDVVSLDAEVLGVETVGNDYLA 194

Query: 188 SVKFFGFIKEDPNASPTQFNEIWNLSKPVSGNGGWVLAGIQQL 230
           SVKFFGFIKEDP ASP QF EIWNLSKP +G GGWVLAGIQQ+
Sbjct: 195 SVKFFGFIKEDPTASPAQFAEIWNLSKPAAGQGGWVLAGIQQI 237


>gi|300313191|ref|YP_003777283.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 317

 Score =  253 bits (646), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 133/231 (57%), Positives = 158/231 (68%), Gaps = 17/231 (7%)

Query: 7   LSHFGLGGAMASMISTILMVALLAFAAMFIYRMFRRKSEANGNSNERPAYAANQ------ 60
           +SHFG+GGAM  ++ ++L +ALL  A +F+ RMF R  EA  N+   PAYA         
Sbjct: 97  MSHFGIGGAMGGLLGSLLTIALLCAAVIFLIRMFARGREAQNNN---PAYATPMPGVSPI 153

Query: 61  GDYGNQTPAIGSQL-DAAQPKALQGNAFGGATAVGGTGGAAFEPTSYGIPADFDTVGFVR 119
           G     TP IGS L D   P ALQGNA+G A               +GIP  FDT GFVR
Sbjct: 154 GSAAGATPEIGSGLRDINPPPALQGNAYGAAAQPAQI-------QQWGIPEGFDTAGFVR 206

Query: 120 NAKTYFIRLQAAWDKGDANDIREFTTPEMFGELKMQLTERGASANHTDVVSLDADMLGVE 179
           NAKTYFIRLQAAWD+ D NDIREFTTPEMF EL+MQLTERGA+ N TDVV LDA +LG+E
Sbjct: 207 NAKTYFIRLQAAWDRADVNDIREFTTPEMFAELRMQLTERGAAPNATDVVQLDAQLLGIE 266

Query: 180 TVGNDYLASVKFFGFIKEDPNASPTQFNEIWNLSKPVSGNGGWVLAGIQQL 230
           T+  DYLA+V+F G IKE P+ S   F EIWNLSKP++G+GGWVLAGIQQ+
Sbjct: 267 TMAFDYLATVRFQGLIKEAPDVSAEPFAEIWNLSKPLNGSGGWVLAGIQQV 317


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 660,103
Number of extensions: 22828
Number of successful extensions: 59
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 2
Length of query: 231
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 149
Effective length of database: 1,231,600
Effective search space: 183508400
Effective search space used: 183508400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)