BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0130.0019.p
         (136 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309984|ref|YP_003774076.1| nitrate/sulfonate/bicarbonate A...   228   1e-61
gi|300310977|ref|YP_003775069.1| alkanesulfonates ABC transporte...   110   3e-26
gi|300313870|ref|YP_003777962.1| nitrate/sulfonate/bicarbonate A...   106   6e-25
gi|300310915|ref|YP_003775007.1| alkanesulfonates ABC transporte...    91   5e-20

>gi|300309984|ref|YP_003774076.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 328

 Score =  228 bits (581), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 109/136 (80%), Positives = 120/136 (88%)

Query: 1   VDAWVTWDPFLAGVQKQTQVRILSDGRNVADYQRYYLASTPFAAAHPEVLAIVFYELKKT 60
           VDAWVTWDPFLAGVQ+Q+QVRILSDGR VADYQRYYLAS  FA A PEVL +VF EL+KT
Sbjct: 190 VDAWVTWDPFLAGVQRQSQVRILSDGRGVADYQRYYLASASFAQARPEVLRVVFDELQKT 249

Query: 61  GLWVRQNPKEAAAFLAPIWGLDAATIELANSRRSYDVRAVVVNALGEQQRIADTFFSAGL 120
           G WV+Q+PKEAAAFLAP+WGLDA TIELANSRRSY+VRAV   ALGEQQRIADTFF+AGL
Sbjct: 250 GHWVKQHPKEAAAFLAPLWGLDADTIELANSRRSYEVRAVRPEALGEQQRIADTFFAAGL 309

Query: 121 LPKKVNATDVAIWKPA 136
           LP+K+N  DVAIW  A
Sbjct: 310 LPRKINTNDVAIWTAA 325


>gi|300310977|ref|YP_003775069.1| alkanesulfonates ABC transporter
           periplasmic protein [Herbaspirillum seropedicae SmR1]
          Length = 327

 Score =  110 bits (276), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 54/132 (40%), Positives = 79/132 (59%)

Query: 1   VDAWVTWDPFLAGVQKQTQVRILSDGRNVADYQRYYLASTPFAAAHPEVLAIVFYELKKT 60
           VDAW  WDPF A  +KQ   R L+ G    ++ +++L++ PFAA +P+V  I+  E+ + 
Sbjct: 195 VDAWAIWDPFQAAAEKQVGARRLATGVGAVNHHQFFLSARPFAAKNPQVEKILLEEISRE 254

Query: 61  GLWVRQNPKEAAAFLAPIWGLDAATIELANSRRSYDVRAVVVNALGEQQRIADTFFSAGL 120
           G WVR +  +AAA LAPI GLDA  IE    R ++  + V    L EQQ+IAD F+   L
Sbjct: 255 GEWVRTHTAQAAAQLAPIQGLDADIIETGLKRYAHVYKPVDAQVLAEQQKIADAFYELKL 314

Query: 121 LPKKVNATDVAI 132
           +PK +  +D  +
Sbjct: 315 IPKPLKVSDAVL 326


>gi|300313870|ref|YP_003777962.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 323

 Score =  106 bits (265), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 54/129 (41%), Positives = 74/129 (57%)

Query: 1   VDAWVTWDPFLAGVQKQTQVRILSDGRNVADYQRYYLASTPFAAAHPEVLAIVFYELKKT 60
           VDA   WDPFLAG +  T+ RIL DG  +++ + ++LA   F   H +++  VF ELKKT
Sbjct: 187 VDAATLWDPFLAGQELATRPRILRDGTGLSNNRTFHLAVPSFVDRHKDIVRTVFAELKKT 246

Query: 61  GLWVRQNPKEAAAFLAPIWGLDAATIELANSRRSYDVRAVVVNALGEQQRIADTFFSAGL 120
             W + +P+E A  LAP  G+D   + LA  RR+Y   AV    + EQQ+IAD F   GL
Sbjct: 247 NQWTQSHPQETAELLAPQLGVDPKVLRLATERRNYTTVAVDAGIVAEQQQIADAFLKLGL 306

Query: 121 LPKKVNATD 129
           +   V   D
Sbjct: 307 IKNPVRVQD 315


>gi|300310915|ref|YP_003775007.1| alkanesulfonates ABC transporter
           periplasmic protein [Herbaspirillum seropedicae SmR1]
          Length = 336

 Score = 90.5 bits (223), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 47/131 (35%), Positives = 71/131 (54%)

Query: 1   VDAWVTWDPFLAGVQKQTQVRILSDGRNVADYQRYYLASTPFAAAHPEVLAIVFYELKKT 60
           VDAW  W+P+LA  Q+  + RIL+D   V   + YY ++  +A  H ++L I   EL K 
Sbjct: 201 VDAWAIWEPYLAAAQQGLKARILADADGVVKNRAYYFSTRDYARDHADLLRIALEELGKI 260

Query: 61  GLWVRQNPKEAAAFLAPIWGLDAATIELANSRRSYDVRAVVVNALGEQQRIADTFFSAGL 120
             W +  P E A+ LA I GL  + +++   R  Y    +    L EQQ+IADTF    L
Sbjct: 261 DAWAQARPDEYASELAGILGLPRSVLDVVVRRYHYGTLPITRAILDEQQQIADTFLDLRL 320

Query: 121 LPKKVNATDVA 131
           +P+K++  + A
Sbjct: 321 IPRKISLLEAA 331


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.133    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 439,975
Number of extensions: 15696
Number of successful extensions: 45
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 4
Length of query: 136
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 60
Effective length of database: 1,260,010
Effective search space: 75600600
Effective search space used: 75600600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)