BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0130.0017.p
         (201 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309988|ref|YP_003774080.1| sensor histidine kinase [Herbas...   247   6e-67

>gi|300309988|ref|YP_003774080.1| sensor histidine kinase
           [Herbaspirillum seropedicae SmR1]
          Length = 202

 Score =  247 bits (630), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 134/204 (65%), Positives = 157/204 (76%), Gaps = 5/204 (2%)

Query: 1   MDAKLAAIIVHDIKNSLGVLEGELRVLAAESPDERAGHAHLTCLTLQEKLIGFLTLYKAS 60
           MD KLAAII+HDIKNSLGVLEGELR L+ + P  R   AH+TCL LQEKLI FLTLYKA 
Sbjct: 1   MDPKLAAIIIHDIKNSLGVLEGELRRLSDDVP--RVQQAHVTCLALQEKLIAFLTLYKAD 58

Query: 61  SQGLTAQIEAWSPQDFLEGLLRHLTIN--QSGLEVTINSEGMPLVAFFDENLVGLALEAA 118
           SQGL AQ+EA SPQDFL+ L+R   +   Q  L + ++   MP++ FFDE+LV LALEAA
Sbjct: 59  SQGLRAQVEAVSPQDFLQSLVREQAVARVQGALTLVVDETDMPIIGFFDEHLVALALEAA 118

Query: 119 LQNATRFARSRIELACRKDGNG-VIFSIRDDGPGIGTHEVKPSTGLGMGLCKAIAAAHHK 177
           LQNA+RFAR+RI L CR    G V+FS+RDDGPGIGT E KPSTGLGM LC AIA AH+K
Sbjct: 119 LQNASRFARTRIALGCRNHPEGGVVFSVRDDGPGIGTQEKKPSTGLGMDLCNAIATAHNK 178

Query: 178 GDKNGEARLADHPDGGAQFELHIP 201
             + GEARL++HPDGGA FEL +P
Sbjct: 179 ETRQGEARLSNHPDGGAVFELCLP 202


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.136    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 674,212
Number of extensions: 28324
Number of successful extensions: 114
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 1
Length of query: 201
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 120
Effective length of database: 1,236,335
Effective search space: 148360200
Effective search space used: 148360200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)