BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0130.0016.p
         (369 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309989|ref|YP_003774081.1| transcription regulator protein...   444   e-126
gi|300311339|ref|YP_003775431.1| CheY chemotaxis protein [Herbas...    62   8e-11

>gi|300309989|ref|YP_003774081.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 542

 Score =  444 bits (1143), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 218/323 (67%), Positives = 269/323 (83%), Gaps = 9/323 (2%)

Query: 1   MTLVPFSRISSLRSLIIDDMPAMRQNIRMHLGQLGITKVDQAGTPDEAIRAVQGGSAYDL 60
           M+LVPFS IS+LRSLIIDDMP MRQNIRMHLGQLG+TKVDQA TPDEAIR VQ G+ YDL
Sbjct: 1   MSLVPFSHISALRSLIIDDMPTMRQNIRMHLGQLGVTKVDQAATPDEAIRFVQSGN-YDL 59

Query: 61  IVCDYNLNKETNGQQLLEFFRTQHLLPPTTMFIMVTAESGYNLVASAAEFQPDAYMLKPL 120
           I+CDYNLNKE+NGQQLLEFFRTQ++L PT MFIMVTAESGYNLVASAAEFQPDAYMLKPL
Sbjct: 60  IICDYNLNKESNGQQLLEFFRTQNMLSPTCMFIMVTAESGYNLVASAAEFQPDAYMLKPL 119

Query: 121 TASKLADRIERLLDKQNALLPINEKLKRKDQAGAVVECDNVLKVAPKWIVDILKTKGSLL 180
           TAS++A+R++RLL+KQ+A+LP+ EK+KRKD +GA+ ECDNVLK APKWIV+I+KTKG+LL
Sbjct: 120 TASRIAERVDRLLEKQHAMLPVTEKMKRKDISGAIAECDNVLKAAPKWIVEIMKTKGTLL 179

Query: 181 IELRRIEEARAVYAQALEMRDDLVWAKVGMARCNIVAGQYADAKVLVQAVLAQNSQYIEA 240
           IE RR++EAR VY QAL MRDDLVWAK+G+ARCNIVAGQ  DA+ +V+ VLAQN Q+I A
Sbjct: 180 IEQRRVDEAREVYKQALGMRDDLVWAKIGLARCNIVAGQMDDARAIVEDVLAQNKQFIAA 239

Query: 241 YDLLAQIEDAQGNQQQALDALARSX--TPGAVK-QCMGIIAEANSLMRSAKP--DESLAK 295
           YDLLAQI++AQGNQ+ AL+AL RS    P A + + +G +A  +  +  A+   D+ L  
Sbjct: 240 YDLLAQIDEAQGNQEGALEALTRSSEIIPSARRSRLVGDVAYRSGHLDQAREAYDKVLKH 299

Query: 296 LEEALHSMPENTGVLMAAAQLHL 318
            + +L + P +   L++ AQ+H+
Sbjct: 300 TKGSLTAQPTD---LLSLAQVHI 319



 Score =  182 bits (463), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 87/109 (79%), Positives = 95/109 (87%)

Query: 261 LARSXTPGAVKQCMGIIAEANSLMRSAKPDESLAKLEEALHSMPENTGVLMAAAQLHLLW 320
           LA     GAVK CM +IAEAN+LMRSAKPDESLAKLEEAL SMPENTGVL+A+AQLHLLW
Sbjct: 434 LADELVDGAVKHCMSVIAEANALMRSAKPDESLAKLEEALASMPENTGVLLASAQLHLLW 493

Query: 321 MSQRGINQEYVKRVNRYLNTLDRLIPGNDRVSKMHKFLRDAVAKAAQKS 369
           MSQRG N+EYVKRV RYL TLDRLIPGNDRV+KMHKFLRD ++K A KS
Sbjct: 494 MSQRGWNEEYVKRVRRYLATLDRLIPGNDRVAKMHKFLRDTLSKVAPKS 542


>gi|300311339|ref|YP_003775431.1| CheY chemotaxis protein
           [Herbaspirillum seropedicae SmR1]
          Length = 131

 Score = 61.6 bits (148), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 73/128 (57%), Gaps = 7/128 (5%)

Query: 13  RSLIIDDMPAMRQNIRMHLGQLGITKVDQAGTPDEAIRAVQG--GSAYDLIVCDYNLNKE 70
           + L++DD   MR+ +R  L +LG T VD+A   ++ ++A+Q      +D +V D+N+   
Sbjct: 7   KFLVVDDFSTMRRIVRNLLKELGYTNVDEA---EDGVQALQKLRSDQFDFVVSDWNM-PN 62

Query: 71  TNGQQLLEFFRTQHLLPPTTMFIMVTAESGYNLVASAAEFQPDAYMLKPLTASKLADRIE 130
            +G  +L+  R    L    + +MVTAE+    + +AA+   + Y++KP TA+ L +++ 
Sbjct: 63  MDGLTMLQEIRKDPALSKLPV-LMVTAEAKKENIVAAAQAGANGYVVKPFTAATLDEKLG 121

Query: 131 RLLDKQNA 138
           ++ +K  A
Sbjct: 122 KIFEKMAA 129


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.132    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,025,191
Number of extensions: 39317
Number of successful extensions: 202
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 3
Length of query: 369
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 282
Effective length of database: 1,207,925
Effective search space: 340634850
Effective search space used: 340634850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)