BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0130.0014.p
         (164 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309990|ref|YP_003774082.1| recombinase A protein [Herbaspi...   301   2e-83

>gi|300309990|ref|YP_003774082.1| recombinase A protein
           [Herbaspirillum seropedicae SmR1]
          Length = 351

 Score =  301 bits (771), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 154/160 (96%), Positives = 158/160 (98%)

Query: 1   MGDSLPGLQARLMSQALRKLTGSINRTSTTVIFINQIRMKIGVMFGNPETTTGGNALKFY 60
           MGDSLPGLQARLMSQALRKLTGSINRT+TTVIFINQIRMKIGVMFGNPETTTGGNALKFY
Sbjct: 166 MGDSLPGLQARLMSQALRKLTGSINRTNTTVIFINQIRMKIGVMFGNPETTTGGNALKFY 225

Query: 61  ASVRLDIRRTGSIKSGDEVIGSETKVKVVKNKVAPPFREAHFDILYGEGTSREGEILDLG 120
           ASVRLDIRRTGSIKSGDEVIGSETKVKVVKNKVAPPFREAHFDILYGEGTSREGEILDLG
Sbjct: 226 ASVRLDIRRTGSIKSGDEVIGSETKVKVVKNKVAPPFREAHFDILYGEGTSREGEILDLG 285

Query: 121 SDAKIVEKSGAWYSYNGERIGQGKDNARNFLKERPELARE 160
           S+ K+VEKSGAWYSYNGERIGQGKDNARN+LKE PELARE
Sbjct: 286 SEHKVVEKSGAWYSYNGERIGQGKDNARNYLKEHPELARE 325


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.135    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 486,893
Number of extensions: 18264
Number of successful extensions: 30
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 86
Effective length of database: 1,250,540
Effective search space: 107546440
Effective search space used: 107546440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 127 (53.5 bits)