BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0130.0010.p
         (158 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309995|ref|YP_003774087.1| Type IV pilin A protein [Herbas...   127   5e-31

>gi|300309995|ref|YP_003774087.1| Type IV pilin A protein
           [Herbaspirillum seropedicae SmR1]
          Length = 168

 Score =  127 bits (319), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 74/166 (44%), Positives = 97/166 (58%), Gaps = 17/166 (10%)

Query: 5   TQSAQRGFTLIELMIVIAIVGVLAMVAIPQYRDYLIRTKVVEGLNLATPAKMAVSETINA 64
           T+S+Q+GFTL+ELM+ +AIVG+LAM+   QY+DY+ R +V EG NLA P K+AV+E I++
Sbjct: 6   TRSSQQGFTLLELMVTLAIVGILAMLGASQYQDYIARARVSEGFNLAEPYKLAVTEQISS 65

Query: 65  KGGTNFKALDTGYSPPAATSTVASITISDADSAGNGGGVITIKYATIGGEGDGKTLILIP 124
             G  F     G      T+ V  I++S     G  GGVITI Y+   GEG   TL L P
Sbjct: 66  NNGV-FTVAQLGLPAFTPTANVTGISVSPMQPRGV-GGVITITYSAQVGEGG--TLTLTP 121

Query: 125 AVGNSAIAWACHAAGATTNP-------------GTLPAKYAPESCK 157
            + +  I W C AAG T  P             GTLPAKYAP +C+
Sbjct: 122 TIASGTIQWQCAAAGVTQAPTPQGATANTGFVAGTLPAKYAPANCR 167


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.131    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 517,479
Number of extensions: 21709
Number of successful extensions: 110
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 1
Length of query: 158
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 80
Effective length of database: 1,250,540
Effective search space: 100043200
Effective search space used: 100043200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)