BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0130.0009.p
         (391 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309997|ref|YP_003774089.1| Zn-dependent protease [Herbaspi...   405   e-114

>gi|300309997|ref|YP_003774089.1| Zn-dependent protease
           [Herbaspirillum seropedicae SmR1]
          Length = 552

 Score =  405 bits (1040), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 208/326 (63%), Positives = 249/326 (76%), Gaps = 25/326 (7%)

Query: 89  EAGYDFXAMATMMGGTGLAMQRQLNFSRDAEREADRVGLQILRDGGFDTSGMVAFFGRLQ 148
           +AG D  AMATMMGGTGLA+QRQLNFSRDAEREADR+GLQI+RDGGFD SGMV FFGRLQ
Sbjct: 227 KAGGD-AAMATMMGGTGLAVQRQLNFSRDAEREADRIGLQIMRDGGFDPSGMVTFFGRLQ 285

Query: 149 SASRGLGDAVPPYLLTHPLTTERIADI------------------------XRLLQNNTA 184
           +ASR   DAVPPYL+THPLTTERIADI                         ++LQN+T 
Sbjct: 286 AASRNYSDAVPPYLMTHPLTTERIADIEARIRDQRYKQRVDNPEFQLVRARTQVLQNDTV 345

Query: 185 QGIRDAQAYFESQLRQNTKMQIMVSKYGLAYAAYLQRSYDKAESLLQEARAASQPMVPSI 244
           QG+R+    F +Q RQNTK+Q   +KYGLAY  Y Q  +++AE+ L+EA+ A+ PM   I
Sbjct: 346 QGLRENAEKFIAQARQNTKLQTAAAKYGLAYVYYRQNKFEQAETALKEAQEAAIPMKTGI 405

Query: 245 LFTNLDIDIKLAKKQGAQALKEADAARKQFPLSRVVAHQYADALIEGQRYDAAVTYLRDQ 304
           +F +LDIDIK+A+KQ +QA++ ADA RKQFP+SR +A QYADALI  +R D AV YLRDQ
Sbjct: 406 MFGSLDIDIKIARKQSSQAVQLADALRKQFPISRTIARQYADALIAARRTDEAVAYLRDQ 465

Query: 305 AQLYRQEVAVQDLLAKAYAAQGKQALQHMALAESYVLQGSLPAALEQLGIARKAPDATFY 364
           AQLYR +  VQ LLAKAYA+QGKQALQH+ALAESY L GSL AA++QLGIAR+APDATFY
Sbjct: 466 AQLYRSDAQVQQLLAKAYASQGKQALQHLALAESYALNGSLLAAIDQLGIARRAPDATFY 525

Query: 365 DQAMIDARERDLKEQWKEEMKETKGR 390
           DQ+ IDARER+ KE+WK+E KE K R
Sbjct: 526 DQSQIDAREREWKERWKDEQKEMKDR 551



 Score =  130 bits (328), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 57/71 (80%), Positives = 65/71 (91%)

Query: 24  GVAQTLPTLGDTEREGLSPLMERKLGEQIMRDIRRDPDYLDDGPVLEYLNNFGSGLVSVR 83
           GVAQ+LPTLGDTEREGLSPLMER+LGE+IMRDIR D DY+DDGP+ EYLNNFG  LVS+ 
Sbjct: 77  GVAQSLPTLGDTEREGLSPLMERRLGEEIMRDIRSDRDYVDDGPISEYLNNFGLNLVSIH 136

Query: 84  PDVRGEAGYDF 94
           P+VRGEAG+DF
Sbjct: 137 PEVRGEAGFDF 147


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,116,514
Number of extensions: 44170
Number of successful extensions: 172
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 2
Length of query: 391
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 304
Effective length of database: 1,207,925
Effective search space: 367209200
Effective search space used: 367209200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)