BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0130.0003.p
         (274 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310002|ref|YP_003774094.1| branched-chain amino acid amino...   489   e-139
gi|300314055|ref|YP_003778147.1| branched-chain amino acid amino...    83   2e-17

>gi|300310002|ref|YP_003774094.1| branched-chain amino acid
           aminotransferase [Herbaspirillum seropedicae SmR1]
          Length = 307

 Score =  489 bits (1258), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 230/258 (89%), Positives = 247/258 (95%)

Query: 17  GTAIFRLKEHTQRLFNSAKIFQMAVPFDQATILEAQRQVVRENQLESCYIRPLIWIGSEK 76
           GTAIFRL+EHT+RL NSAKIFQM VP+D  T+ +AQRQVVRENQLESCYIRPLIWIGSEK
Sbjct: 50  GTAIFRLQEHTRRLRNSAKIFQMEVPYDHDTLAQAQRQVVRENQLESCYIRPLIWIGSEK 109

Query: 77  LGVSAKGNKIHVAIAAWPWGAYLGEDGINKGIRVKTSSFSRHHVNVSLVRAKASGYYINS 136
           LGVSAKGN+IHVA+AAW WGAYLGEDG+NKGIRVKTSSFSRHHVNVSLVRAKA GYYINS
Sbjct: 110 LGVSAKGNQIHVAVAAWSWGAYLGEDGLNKGIRVKTSSFSRHHVNVSLVRAKACGYYINS 169

Query: 137 ILANQEALADGYDEALLLDTDGYVSEGSGENVFIIKNGKLYTPDLASCLDGITRDAVLTM 196
           ILANQEALADGYDEALLLDT+GYVSEGSGENVFI+KNGK+YTPDLASCLDGITRDAVLTM
Sbjct: 170 ILANQEALADGYDEALLLDTEGYVSEGSGENVFIVKNGKIYTPDLASCLDGITRDAVLTM 229

Query: 197 ARDLGIEVIEKRITRDEMYCCDEAFFTGTAAEITPIRELDNRTIGNGGRGPITERLQTLF 256
           ARDLGIEVIEKRITRDEMYC DEAFFTGTAAEITPIRELD R IG+G RGP+TE+LQTLF
Sbjct: 230 ARDLGIEVIEKRITRDEMYCADEAFFTGTAAEITPIRELDRRVIGSGARGPVTEKLQTLF 289

Query: 257 FDVVSGKAPQYQHWLTLV 274
           FDVV+G+APQY+HWLTLV
Sbjct: 290 FDVVAGRAPQYKHWLTLV 307


>gi|300314055|ref|YP_003778147.1| branched-chain amino acid
           aminotransferase/4-amino-4-deoxychorismate lyase
           [Herbaspirillum seropedicae SmR1]
          Length = 282

 Score = 83.2 bits (204), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 110/237 (46%), Gaps = 7/237 (2%)

Query: 17  GTAIFRLKEHTQRLFNSAKIFQMAVPFDQATILEAQRQVVRENQLESCYIRPLIWIGSEK 76
           G   FR K+H  RLF S     +  P D+A  ++   QVV+ N L+   I   +  G  K
Sbjct: 41  GRKAFRGKQHLARLFRSLAGIGIPNPHDEAGWMDLIDQVVQANGLQDQMIYLQVTRGVAK 100

Query: 77  LGVSAKGNKIHVAIAAWPWGAYLGEDGINKGIRVKTSSFSRHHVNVSLVRAKASGYYINS 136
              +     +   +      A      + KG+   T    R  +N  +     S   + +
Sbjct: 101 RAHAFPKEVVPTVLIMTNPMALPSAAMLEKGVACVTME-DRRWLNCQI----KSTSLLGN 155

Query: 137 ILANQEALADGYDEALLLDTDGYVSEGSGENVFIIKNGKLYTPDLASC-LDGITRDAVLT 195
           +LA Q A  +   EA+    DG++SE S  NV+++K+GK+  P   +  L+GI    +  
Sbjct: 156 VLAAQFAAENEVTEAIQF-RDGFLSEASASNVWVVKDGKISAPPKDNLILEGIRYGLMEE 214

Query: 196 MARDLGIEVIEKRITRDEMYCCDEAFFTGTAAEITPIRELDNRTIGNGGRGPITERL 252
           +  + GI +  +RITR+E+   DE   +  + E+ P+  LD + +G+G  GP+  R+
Sbjct: 215 LCAEQGIALESRRITREEVLAADELMISSASKEVLPVVTLDGQPVGSGRPGPVFARV 271


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 820,783
Number of extensions: 33085
Number of successful extensions: 79
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 2
Length of query: 274
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 190
Effective length of database: 1,222,130
Effective search space: 232204700
Effective search space used: 232204700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)