BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0129.0025.p
         (300 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313066|ref|YP_003777158.1| drug/metabolite transporter (DM...   115   3e-27

>gi|300313066|ref|YP_003777158.1| drug/metabolite transporter (DMT)
           superfamily permease [Herbaspirillum seropedicae SmR1]
          Length = 324

 Score =  115 bits (289), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 136/267 (50%), Gaps = 1/267 (0%)

Query: 8   SRQAIVLLGVVVLIWGTTWPVNKAILHYLSPIWSTAIRSCIGTLVLVILCLARGRLVLPQ 67
           SR  +V + + + IWG  WPV K    ++ P+W  A R     ++  ++ +  G+L LP 
Sbjct: 28  SRLFLVCVVLAICIWGGNWPVMKFGSQFIPPLWFAASRFLSAAILSFVIAVVLGKLRLPT 87

Query: 68  RGDLPVVFSVGLLHMTAYSILGNVGMQHVAAGRSVVLAYTTPMWVAPCARLFLGEAFTLR 127
           R + PVV  VG+L M  ++ L    +  V  GR+ ++AY T +WV P A L L +  + +
Sbjct: 88  RQEWPVVVGVGVLQMGLFTALVTGALHFVMPGRASLIAYATSIWVVPGAALVLKQKLSPQ 147

Query: 128 RAIGTVFGLLGLVLIFNPLAFDWGNHDSVLGNGLILLGAMFWAASILYVRGHRWIGEPFD 187
           +++ TV    G+ +I  P A    +  S++G  ++ + ++ WA +IL ++    +   F 
Sbjct: 148 QSLATVCSYAGMAVIVLP-ALLHADLHSMIGYLMLGVASLSWAMNILQIKMSPGVKLDFA 206

Query: 188 LLVWQALTASCVLVPCAFLFEGPPQFEWSVPLVGLQVYSATFGIAIAYWAINKVNHSLPA 247
           LL WQ L A+  L   A   +G P F       G+  Y+     A+ +  + ++   L  
Sbjct: 207 LLPWQTLVAALPLSLLALAVDGAPSFLADPHAWGVIAYTGPLATALTFLIVLQMTQRLSP 266

Query: 248 MTTSLGLLGVPVFGIVCSSLALGETLE 274
           +T S+ +LGVPV G+  SSL  GE L 
Sbjct: 267 VTVSVCMLGVPVVGLTLSSLVFGERLS 293


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.142    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 946,302
Number of extensions: 42841
Number of successful extensions: 158
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 2
Length of query: 300
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 215
Effective length of database: 1,217,395
Effective search space: 261739925
Effective search space used: 261739925
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 130 (54.7 bits)