BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0129.0022.p (133 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310278|ref|YP_003774370.1| transcription regulator protein... 84 5e-18 gi|300309921|ref|YP_003774013.1| LysR family transcription regul... 83 6e-18 gi|300313769|ref|YP_003777861.1| transcription regulator protein... 79 2e-16 gi|300311929|ref|YP_003776021.1| LysR family transcription regul... 72 2e-14 gi|300310624|ref|YP_003774716.1| transcription regulator protein... 71 4e-14 >gi|300310278|ref|YP_003774370.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 313 Score = 83.6 bits (205), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 43/115 (37%), Positives = 72/115 (62%) Query: 8 LIIFCHVAKAGSLSKAAKALSLSRSALSHRIKAIEGRLGCQLLMRTTRRVGLTEAGYRLA 67 ++IF V + G+ SKAA+ L L+ S++S I A+E LG LL RTTR++ LTEAG+ Sbjct: 12 MVIFSRVVELGAFSKAARELGLTSSSVSQHISALEAMLGTTLLHRTTRKLSLTEAGHSFY 71 Query: 68 EHADRMADILKDANMLAHGLNEDTAGLVRISAPLTLGSVWLKPLLMSYMQANPRV 122 + R+ D+ +A L L+++ G +RI+A + S +L P L +++A+P++ Sbjct: 72 ANCSRIVDLASEARQLTESLHKELLGELRIAASSFMASEYLVPALDDFIRAHPKL 126 >gi|300309921|ref|YP_003774013.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 299 Score = 83.2 bits (204), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 47/121 (38%), Positives = 71/121 (58%) Query: 11 FCHVAKAGSLSKAAKALSLSRSALSHRIKAIEGRLGCQLLMRTTRRVGLTEAGYRLAEHA 70 F VA GS KAA+AL +S++A+S + +E RLG +L+ RTTRR+ LTEAG E Sbjct: 10 FIAVADLGSFVKAAEALGISKAAVSRTVLELEARLGSRLMQRTTRRLSLTEAGALYLERC 69 Query: 71 DRMADILKDANMLAHGLNEDTAGLVRISAPLTLGSVWLKPLLMSYMQANPRVXFRAAASS 130 ++ L++A+ L + GL+RI+APLT G + L PL +++ +P + S Sbjct: 70 KQIVAALEEADDLLSSGSAKPTGLLRINAPLTFGVLHLAPLWPMFLERHPEISLDITLSD 129 Query: 131 R 131 R Sbjct: 130 R 130 >gi|300313769|ref|YP_003777861.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 318 Score = 78.6 bits (192), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 46/128 (35%), Positives = 70/128 (54%) Query: 4 DANSLIIFCHVAKAGSLSKAAKALSLSRSALSHRIKAIEGRLGCQLLMRTTRRVGLTEAG 63 D N L +F V GS S AA+AL+ +S +S R+ +E RLG +LL R+TR V +TE G Sbjct: 3 DLNDLALFAAVVVHGSFSAAARALNTPKSRVSRRVAELEQRLGVRLLQRSTRVVRVTEVG 62 Query: 64 YRLAEHADRMADILKDANMLAHGLNEDTAGLVRISAPLTLGSVWLKPLLMSYMQANPRVX 123 H + M + + A + AG +R+S+P+ + V+L PLL ++ A+P V Sbjct: 63 SAFFTHCEAMTNAARAAVEVTEHAGARPAGRLRVSSPMGVAHVFLAPLLARFLCAHPDVR 122 Query: 124 FRAAASSR 131 S+R Sbjct: 123 LELELSNR 130 >gi|300311929|ref|YP_003776021.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 304 Score = 72.0 bits (175), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 41/126 (32%), Positives = 68/126 (53%) Query: 6 NSLIIFCHVAKAGSLSKAAKALSLSRSALSHRIKAIEGRLGCQLLMRTTRRVGLTEAGYR 65 S+ +FC A+ GS + AA+AL L+ +++S I +E RLG +L RTTR++ LT G Sbjct: 10 GSIELFCKAAELGSFTAAAEALGLTPASVSRSISRLESRLGVRLFARTTRQIRLTREGEL 69 Query: 66 LAEHADRMADILKDANMLAHGLNEDTAGLVRISAPLTLGSVWLKPLLMSYMQANPRVXFR 125 + + + + DA + G + +GL+RIS L PLL + QA P++ Sbjct: 70 YRDQCQQALEQIADAERILTGQQKVPSGLLRISVGTPYAHYRLLPLLPRFQQAYPQIEVE 129 Query: 126 AAASSR 131 + ++R Sbjct: 130 LSIANR 135 >gi|300310624|ref|YP_003774716.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 310 Score = 70.9 bits (172), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 40/115 (34%), Positives = 64/115 (55%) Query: 11 FCHVAKAGSLSKAAKALSLSRSALSHRIKAIEGRLGCQLLMRTTRRVGLTEAGYRLAEHA 70 F V + G+ S+AAKAL L+ S++S ++A+E L LL R+TR++ LTEAG +H Sbjct: 15 FARVVELGAFSRAAKALGLTTSSVSQHVRALELSLQATLLNRSTRKLSLTEAGTLFYKHC 74 Query: 71 DRMADILKDANMLAHGLNEDTAGLVRISAPLTLGSVWLKPLLMSYMQANPRVXFR 125 + +A LN + G VRI+ + + +L P L +++ NP+V R Sbjct: 75 AHIVTAASEAEQSIAVLNNEMVGEVRIAVSSFMSTKYLIPALHDFIRHNPKVRLR 129 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.131 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 295,412 Number of extensions: 9752 Number of successful extensions: 95 Number of sequences better than 1.0e-08: 35 Number of HSP's gapped: 95 Number of HSP's successfully gapped: 35 Length of query: 133 Length of database: 1,619,870 Length adjustment: 75 Effective length of query: 58 Effective length of database: 1,264,745 Effective search space: 73355210 Effective search space used: 73355210 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 125 (52.8 bits)