BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0129.0018.p
         (288 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311980|ref|YP_003776072.1| Fe-S protein [Herbaspirillum se...   337   5e-94

>gi|300311980|ref|YP_003776072.1| Fe-S protein [Herbaspirillum
           seropedicae SmR1]
          Length = 280

 Score =  337 bits (865), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 180/288 (62%), Positives = 213/288 (73%), Gaps = 8/288 (2%)

Query: 1   MITLSALYIYPIKSCGGISLSQAAIGEFGLDLDRSWMLVDRDGRFLSQREYGRMATISTA 60
           M  LSA+++YPIKSC G+SL+   IG  GL LDR WMLVDR GRFL+QR++  MA I+ A
Sbjct: 1   MSILSAIHLYPIKSCAGLSLTHTPIGPLGLALDRHWMLVDRQGRFLTQRQHPEMACITPA 60

Query: 61  LEDDTPALLTVRAPGMADLHLPSRIEDGAARLAVTIWDDGVDALDCGAVAHRWFSDYLQA 120
            E +    L +RAPGM  L L  + EDG A LAV +W+  +DALD G  A +W SDYL  
Sbjct: 61  FEGER---LVLRAPGMPALSLSMQGEDGEA-LAVQVWNSHLDALDQGQTAAQWCSDYLGE 116

Query: 121 DVRLVRFDPQSRRVCSPRWTGDHTATTQFSDGFPILVIGEASLQDLNQRLQKKGAPALSM 180
            VRLVRF+P + R CS RWT    A TQFSDG+P+LVIG+ASL+DLN RL  KGAPAL M
Sbjct: 117 AVRLVRFNPAASRPCSTRWTEGRQAYTQFSDGYPLLVIGQASLEDLNARLTAKGAPALGM 176

Query: 181 DRFRPNLVLSGLEAYEEDYVDTLSFGPAGREVVLKLVKPCARCPVPGIDQRTGLRDAGWP 240
           +RFRPNLV+SGL+AY+ED++ TL+ GP    V L+LVKPCARCP+PGIDQRTGLRDA WP
Sbjct: 177 ERFRPNLVISGLDAYDEDHISTLTLGP----VELRLVKPCARCPIPGIDQRTGLRDARWP 232

Query: 241 DEPLDTLAAYRANERVGGGLTFGQNAIVVQGWGNLISVGQDVAGELAF 288
           DEPLDTLA YRA+ RV GGLTFGQNAIV  G G +I VGQ V  E  F
Sbjct: 233 DEPLDTLAGYRADPRVDGGLTFGQNAIVTGGEGGVIEVGQAVQWEWNF 280


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.139    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 977,375
Number of extensions: 43760
Number of successful extensions: 97
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 204
Effective length of database: 1,222,130
Effective search space: 249314520
Effective search space used: 249314520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)