BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0129.0016.p (298 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310948|ref|YP_003775040.1| branched-chain amino acid ABC t... 270 9e-74 gi|300312761|ref|YP_003776853.1| branched-chain amino acid ABC t... 193 2e-50 gi|300309516|ref|YP_003773608.1| branched-chain amino acid ABC t... 171 5e-44 gi|300313247|ref|YP_003777339.1| branched-chain amino acid ABC t... 123 1e-29 gi|300310991|ref|YP_003775083.1| branched-chain amino acid ABC t... 116 2e-27 >gi|300310948|ref|YP_003775040.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 394 Score = 270 bits (690), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 127/294 (43%), Positives = 184/294 (62%) Query: 3 TGLLVAEYLVKSGVVGVIGHWNSGVGIPASRIYSKAGVVQIAQATTSHAYTQQSFPTAFR 62 T VA LV+ V+ V+GHW SG + A+ +Y +AGV+Q+ + S T S+P FR Sbjct: 97 TAEFVARSLVQQQVIAVVGHWTSGTSLAAAPVYHRAGVIQVTPSAMSRRLTAMSYPRIFR 156 Query: 63 IVPHDDENAYYTAEYVVRQMKAQRIAIIDDQTPFGNGYAKQFAQSVASFKGNIVSQYGIS 122 +P+++ A Y V +++ + I IDD+TPFG G A+QFA++ + +V +Y +S Sbjct: 157 TIPNNESLGRLAAGYAVDKLETRTIVTIDDRTPFGQGLAEQFARTASERGAQVVGRYSVS 216 Query: 123 SRTSDFNAVLRNIMKQNPDVVFFGGLDAQAGQLARELRRFGIEAPLVGVGGTVGPQFLKA 182 +TSDFNA L K PD++FFGGLD QAG LA+ +RR + A L+ GT+G FL Sbjct: 217 DKTSDFNAALLEARKLQPDLIFFGGLDWQAGVLAKSIRRLKLHARLMASPGTLGLPFLMR 276 Query: 183 AGEAANGTIALEPGPASYKGMQWQQFDKAYKSRYGDDMGLYAPFSYDAVQVLVAAIRQAN 242 AG ANG + LEPGP K W+ F + Y + DM LYA F+Y+A Q ++ IRQA Sbjct: 277 AGPDANGALVLEPGPPQDKMPGWKSFRQRYSENFDSDMDLYAVFAYEAAQAIIQGIRQAG 336 Query: 243 SLERQRIVAAMHQVRHNGLTGPVAFDEEGNLANPVFTIYQVRNQKWMPLKTIGG 296 S + +RI AMH++R G++GPVAF+EEG+L P FT+Y+V++Q+W P+ G Sbjct: 337 SADPERIAEAMHRLRFEGVSGPVAFNEEGDLLQPSFTMYEVKDQRWQPVARFNG 390 >gi|300312761|ref|YP_003776853.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 380 Score = 193 bits (490), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 104/283 (36%), Positives = 164/283 (57%), Gaps = 7/283 (2%) Query: 7 VAEYLVKSGVVGVIGHWNSGVGIPASRIYSKAGVVQIAQATTSHAYTQQSFPTAFRIVPH 66 VA LV V VIGH NSG IPAS+IYS AG+ Q++ + T+ YTQQ F TAFR+V + Sbjct: 89 VATKLVDQKVAAVIGHLNSGTTIPASKIYSDAGIPQVSPSATNPKYTQQGFKTAFRVVAN 148 Query: 67 DDENAYYTAEYVVRQMKAQRIAIIDDQTPFGNGYAKQFAQSVASFKGNIVSQYGISSRTS 126 D + +Y V+++ ++IA+IDD+T +G G A +FA+ + G IV + + + Sbjct: 149 DAQLGAALGKYAVQKLGTKQIAVIDDRTAYGQGVADEFAKGAKAAGGTIVGTQYTNDKAT 208 Query: 127 DFNAVLRNIMKQNPDVVFFGGLDAQAGQLARELRRFGIEAPLVGVGGTVGPQFLKAAGEA 186 DFNA+L ++ + PDVVFFGG+DA G + R++++ GI A +G G AG+ Sbjct: 209 DFNAILTSLKGKKPDVVFFGGMDAVGGPMLRQMKQLGISAKFMGGDGICTGSLPGLAGDG 268 Query: 187 A--NGTIALEPG---PASYKGMQWQQFDKAYKSRYGDDMGLYAPFSYDAVQVLVAAIRQA 241 + I E G A KGM F AYK ++G D+ A ++YDA + A+ +A Sbjct: 269 LGDDQVICAEAGGVDEAGKKGM--DDFRAAYKKKFGIDVVYNAAYAYDATMTVADAMAKA 326 Query: 242 NSLERQRIVAAMHQVRHNGLTGPVAFDEEGNLANPVFTIYQVR 284 S + ++ + + ++ H G+TG +AFD +G++ + T+Y + Sbjct: 327 GSADPKKYLPELAKISHKGVTGVIAFDAKGDIKDGSLTLYTYK 369 >gi|300309516|ref|YP_003773608.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 378 Score = 171 bits (434), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 90/293 (30%), Positives = 164/293 (55%), Gaps = 2/293 (0%) Query: 2 RTGLLVAEYLVKSGVVGVIGHWNSGVGIPASRIYSKAGVVQIAQATTSHAYTQQSFPTAF 61 ++G+ VA+ L GV ++G +NSGV IPASR+Y+ AG+V +A ++ TQQ F T F Sbjct: 86 KSGVAVAQKLADQGVKAIVGPYNSGVTIPASRVYNDAGIV-VATVASNPKITQQGFATLF 144 Query: 62 RIVPHDDENAYYTAEYVVRQMKAQRIAIIDDQTPFGNGYAKQFAQSVASFKGNIVSQYGI 121 R+ D + A Y +++K +R+A+IDD+T +G G A++F + + ++VS Sbjct: 145 RVAASDSQLGGKMALYAAKELKFKRVAVIDDRTAYGQGLAQEFIKVAKANGIDVVSTDFT 204 Query: 122 SSRTSDFNAVLRNIMKQNPDVVFFGGLDAQAGQLARELRRFGIEAPLVGVGGTVGPQFLK 181 + + +DF A+L +I + PD VF GG Q G + R++++ G++ PL+G G P+ + Sbjct: 205 NDKATDFTAILTSIKGKKPDAVFLGGYAPQGGPIKRQMKQLGVDVPLMGGDGICSPEMGR 264 Query: 182 AAGEAANGTI-ALEPGPASYKGMQWQQFDKAYKSRYGDDMGLYAPFSYDAVQVLVAAIRQ 240 G+A ++ + G K + + F Y+ +Y YA YD + ++ A++Q Sbjct: 265 LGGDAIGESVYCTQGGTMLDKAKEGKVFSDEYQKKYNRPAETYAVSFYDGMMLIAQAMKQ 324 Query: 241 ANSLERQRIVAAMHQVRHNGLTGPVAFDEEGNLANPVFTIYQVRNQKWMPLKT 293 ANS++ ++ A+ ++ + G+ G FD +L T+Y+ ++ +PL + Sbjct: 325 ANSVDPKQFGPALAKISYKGVAGQYDFDANHDLKQSPVTVYRFKDGLPVPLTS 377 >gi|300313247|ref|YP_003777339.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 385 Score = 123 bits (309), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 90/286 (31%), Positives = 132/286 (46%), Gaps = 12/286 (4%) Query: 7 VAEYLVKSGVVGVIGHWNSGVGIPASRIYSKAGVVQIAQATTSHAYTQQSFPTAFRIVPH 66 +A Y VK V GVIG W+S + + IY A + QI TS +T FR+V Sbjct: 88 IARYYVKEKVAGVIGPWSSDAALATAAIYESAQIPQIGFTATSSQWTGMGNRMPFRVVGG 147 Query: 67 DDENAYYTAEYVVRQMKAQRIAIIDDQTPFGNGYAKQFAQSVASFKGNI-VSQYGISSRT 125 E A AE R ++ +RI +I + A +++ I +++Y + R+ Sbjct: 148 TRELAATLAEVATRSLQGRRIFVIQSDAAYSRALADTLVENLGGSAQQIALARYQVGRRS 207 Query: 126 SDFNAVLRNIMKQNPDVVFFGGLDAQAGQLARELRRFGIEAPLVGVGGTVG---PQFLKA 182 +DF+A L+ DV+ F GL QA R A L+ GG P L+ Sbjct: 208 TDFHAALKAAEAHQADVIVFVGLYPQARAFIDGANRTRTTARLLLTGGASNLSLPAPLEL 267 Query: 183 AGEAANGTIALEPGPASYKGMQWQQFDKAYKSRYGDDMGLYAPFSYDAVQVLVAAIRQAN 242 IA P QW+ + Y+ R+G Y+ ++YDA VL AAI QA Sbjct: 268 RLHVLEYEIARPHCP------QWKVVTQTYQRRFGAAPTTYSFYAYDAASVLTAAIVQAG 321 Query: 243 SLERQRIVAAMHQVRHNGLTGPVAFDEEGNLANPVFTI--YQVRNQ 286 S +I A+H++RH GL G ++FD G A+P +T+ YQ R Q Sbjct: 322 SDNGDKIATALHRMRHAGLHGTLSFDATGANAHPRYTLLRYQERWQ 367 >gi|300310991|ref|YP_003775083.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 373 Score = 116 bits (290), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 80/286 (27%), Positives = 139/286 (48%), Gaps = 12/286 (4%) Query: 2 RTGLLVAEYLVKSGVVGVIGHWNSGVGIPASRIYSKAGVVQIAQATTSHAYTQ-QSFPTA 60 + + VA +V G+ VIGH SG IPAS IY GVV I + T+ T+ + Sbjct: 82 KQAVAVANKIVSQGIKYVIGHVCSGSTIPASDIYENEGVVMITPSATAPQLTEAKPHKFI 141 Query: 61 FRIVPHDDENAYYTAEYVVRQMKAQRIAIIDDQTPFGNGYAKQFAQSVASFKGNIVSQYG 120 FR + DD+ A YV+ ++K +++A++ D+ +G G A ++ + K +V G Sbjct: 142 FRTIGRDDQQGPAAARYVIEKLKPKKVAVLHDKQSYGQGVASSVKAALDAAKVPVVVFEG 201 Query: 121 ISSRTSDFNAVLRNIMKQNPDVVFFGGLDAQAGQLARELRRFGIEAPLVGVGGTVGPQFL 180 I++ SD++A++ + Q D V+FGG + G + R+ R GI+A +G G Sbjct: 202 INAGDSDYSAIVTKLKSQGVDFVYFGGYHPEMGLIMRQAREQGIKAVFMGPEGVGNKDIT 261 Query: 181 KAAGEAANGTIALEPG-----PASYKGMQWQQFDKAYKSRYGDDMGLYAPFSYDAVQVLV 235 AG A+ G + P PA+ ++ K D G + +Y V+++ Sbjct: 262 AIAGPASEGMLVTLPADFAADPANAALVKAFAAAKR------DPNGPFQMPAYSGVKIIA 315 Query: 236 AAIRQANSLERQRIVAAMHQVRHNGLTGPVAFDEEGNLANPVFTIY 281 AI A S + +++ A +H G V +D++G+L + F ++ Sbjct: 316 DAIAGAKSTDPEKVAAYIHANSFKTPIGNVEYDKKGDLKSFKFVVF 361 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.134 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 983,777 Number of extensions: 42055 Number of successful extensions: 163 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 156 Number of HSP's successfully gapped: 7 Length of query: 298 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 213 Effective length of database: 1,217,395 Effective search space: 259305135 Effective search space used: 259305135 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)