BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0129.0009.p
         (137 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311978|ref|YP_003776070.1| UTP-glucose-1-phosphate uridyly...    97   4e-22
gi|300311483|ref|YP_003775575.1| UTP-glucose-1-phosphate uridyly...    78   2e-16

>gi|300311978|ref|YP_003776070.1| UTP-glucose-1-phosphate
           uridylyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 307

 Score = 97.4 bits (241), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 49/70 (70%), Positives = 58/70 (82%), Gaps = 3/70 (4%)

Query: 9   ADDFMDAPEGGKNVLAQMLDVFDTEQKSLLAVQDVPRNDTRQYGIVSTDPGSAHSDRLDV 68
           ADDFMD   G KNV+AQM  +F+ E KSLLAVQDVPR +TRQYGIVS   GSA++DRL++
Sbjct: 104 ADDFMDVDAGQKNVMAQMTAMFEREGKSLLAVQDVPRPETRQYGIVS---GSAYADRLEL 160

Query: 69  ISGIVEKPAP 78
           +SGIVEKPAP
Sbjct: 161 MSGIVEKPAP 170


>gi|300311483|ref|YP_003775575.1| UTP-glucose-1-phosphate
           uridylyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 297

 Score = 78.2 bits (191), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 38/70 (54%), Positives = 51/70 (72%), Gaps = 3/70 (4%)

Query: 9   ADDFMDAPEGGKNVLAQMLDVFDTEQKSLLAVQDVPRNDTRQYGIVSTDPGSAHSDRLDV 68
           ADDFMD   G K VLAQM ++++ E  S+LAVQ+VP++DT+QYGIVS  P   +   L+ 
Sbjct: 134 ADDFMDTDAGVKPVLAQMTEIYEREGMSMLAVQEVPQSDTKQYGIVSATP---YQPNLER 190

Query: 69  ISGIVEKPAP 78
           ++ IVEKPAP
Sbjct: 191 VNAIVEKPAP 200


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 374,680
Number of extensions: 10899
Number of successful extensions: 37
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 2
Length of query: 137
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 61
Effective length of database: 1,260,010
Effective search space: 76860610
Effective search space used: 76860610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)