BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0129.0006.p
         (596 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311975|ref|YP_003776067.1| phosphoglucomutase [Herbaspiril...   242   6e-65

>gi|300311975|ref|YP_003776067.1| phosphoglucomutase [Herbaspirillum
           seropedicae SmR1]
          Length = 549

 Score =  242 bits (618), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 112/155 (72%), Positives = 126/155 (81%)

Query: 132 NRMHPSALXDAGISIGVDPLGGAGVHYWGAIADRYDLRLTVVNREVDPTFRFVPLDWDAQ 191
           N +  +A+  A + IGVDPLGGAG+HYW AIADRY L L VVN EVD TFRFVPLDWDAQ
Sbjct: 219 NIIDLAAISGANVKIGVDPLGGAGLHYWSAIADRYKLNLEVVNTEVDATFRFVPLDWDAQ 278

Query: 192 IRMDPSSQYAMRELISLKDKFDIAFACDTDHDRHGIVTKSVGLMPSNHFLSAAVSYLFQH 251
           IRMDPSS +AM ELI+LKD+FD+A ACDTDHDRHGIV KS GLMP+N +LS AV YLF+H
Sbjct: 279 IRMDPSSPHAMSELIALKDRFDVAMACDTDHDRHGIVAKSRGLMPANDYLSVAVYYLFRH 338

Query: 252 RPEWRADTGVGKTLVSSQMIDRVAAQLHRPLQEMP 286
           RP WRAD  +GKTLVSSQMI+RVA  L R L EMP
Sbjct: 339 RPAWRADAAIGKTLVSSQMINRVAKHLERKLLEMP 373



 Score =  218 bits (555), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 105/146 (71%), Positives = 123/146 (84%), Gaps = 1/146 (0%)

Query: 1   MSSISPLAGQRAATSSLTDVPVLVSSYYSLRPDAGIASHQVAFGTSGHRGSSLSYSFNEW 60
           MSS++PLAGQRAA S+L D+PVLVS+YYSLRPD   ASH+VAFGTSGHRG++ ++SFNEW
Sbjct: 1   MSSVNPLAGQRAAPSALVDLPVLVSNYYSLRPDVAEASHRVAFGTSGHRGNANAHSFNEW 60

Query: 61  HVLAITQAICDYRAENNISGPLFIGIDTHALSAPAFASALEVLAANGVQTMVSRGTPYTP 120
           HVLAITQAICDYR E    GPLF+GIDTHALS PA+ SALEVLAAN V TM++ G+PY P
Sbjct: 61  HVLAITQAICDYRKEQGFKGPLFLGIDTHALSEPAWHSALEVLAANEVVTMLAEGSPYAP 120

Query: 121 TPAISHAILMHNRMHPSALXDAGISI 146
           TPA+SHAIL HNR+H  AL D GI +
Sbjct: 121 TPAVSHAILTHNRVHRDALAD-GIVV 145



 Score =  133 bits (335), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 65/89 (73%), Positives = 74/89 (83%)

Query: 462 KKLLSKLSADNVHSTQLAGEEIRQILTTAPANDKAFGGVKIVSDNGWFAARPSGTEHIYK 521
           K  LSKLS  +V ST+LAGE IR++LTTAPAN K FGG+KIV+DNGWFAARPSGTE IYK
Sbjct: 460 KARLSKLSPQDVSSTELAGEPIREVLTTAPANGKPFGGLKIVTDNGWFAARPSGTESIYK 519

Query: 522 IYAESFRDEKHLDSIFYEAQEIVSAALAA 550
           IY ESFRD+ HLD IF EAQ+IV+ AL A
Sbjct: 520 IYGESFRDQAHLDKIFAEAQDIVTRALQA 548


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.130    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,770,600
Number of extensions: 71644
Number of successful extensions: 225
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 3
Length of query: 596
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 505
Effective length of database: 1,188,985
Effective search space: 600437425
Effective search space used: 600437425
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 133 (55.8 bits)