BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0129.0002.p (362 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis pro... 89 7e-19 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 76 5e-15 gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis tra... 76 5e-15 gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis tra... 75 1e-14 gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sen... 74 1e-14 >gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 583 Score = 88.6 bits (218), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 67/214 (31%), Positives = 95/214 (44%), Gaps = 53/214 (24%) Query: 110 RQAEEFAAGFNAGQATKLLNTEVAPLQSQWLEAIDKLVKLEQGQIQRDLDDFAQSGRRTT 169 +Q ++ + + A KL+ +E+ PLQ + +D+L +Q + + +D A++ TT Sbjct: 130 KQIDKLQSSGDKDAAIKLMLSEMVPLQKIYFSQLDELSDTQQKLMDQSVDQ-AEAAYETT 188 Query: 170 LATIAICAA-AMLLAVLVAWRLNRSITRPLNEAVRLASRVAARLPEAVRLASEFFMVLLI 228 + I A A +AW ++RSITRPL+ AV +A VAA Sbjct: 189 RMIMVIAGVLAATFAAFIAWTISRSITRPLSRAVEVAETVAA------------------ 230 Query: 229 GILLSEYGLSREGVLIAGLLFFVVRPMAXRVAAGDLTAHITAGGRDETGQLLSALGSMNQ 288 GDLTA I A DETG+LL AL +MNQ Sbjct: 231 ---------------------------------GDLTAVIAAHSNDETGRLLQALAAMNQ 257 Query: 289 SLLQTVSEVRDGTQGIFRVSQQNAAGNTDLAART 322 L V EVR GT + S Q A GN DL++RT Sbjct: 258 KLKAIVLEVRRGTDSMVTASTQIATGNLDLSSRT 291 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 75.9 bits (185), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 60/169 (35%), Positives = 77/169 (45%), Gaps = 58/169 (34%) Query: 154 IQRDLDDFAQSGRRTTLATIAICAAAMLLAVLVAWRLNRSITRPLNEAVRLASRVAARLP 213 I RD +SGR LA + A ++L +AW L RSITRPLN+AV Sbjct: 179 INRDY----RSGRSMLLA---LGAIEIVLGAALAWLLTRSITRPLNQAV----------- 220 Query: 214 EAVRLASEFFMVLLIGILLSEYGLSREGVLIAGLLFFVVRPMAXRVAAGDLTAHITAGGR 273 +A VAAGDLT+ I + R Sbjct: 221 ----------------------------------------TIAETVAAGDLTSRIDSSSR 240 Query: 274 DETGQLLSALGSMNQSLLQTVSEVRDGTQGIFRVSQQNAAGNTDLAART 322 DETG+LL+AL +MN +LL V VR GT+ I S++ A GN DL+ART Sbjct: 241 DETGKLLAALKTMNGNLLDIVGRVRMGTETINTASREIATGNLDLSART 289 >gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 75.9 bits (185), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 50/98 (51%), Positives = 57/98 (58%), Gaps = 11/98 (11%) Query: 236 GLSREGVLIAGLLFFVV-----RPM------AXRVAAGDLTAHITAGGRDETGQLLSALG 284 GL VLIA LL F+V RP+ A RVA GDLT I GRDETG L+ AL Sbjct: 195 GLLAATVLIASLLAFLVATNVSRPLKEAVQIAQRVARGDLTLRIRPAGRDETGALMEALR 254 Query: 285 SMNQSLLQTVSEVRDGTQGIFRVSQQNAAGNTDLAART 322 +MN+SL VSEVR GT I S + A GN DL+ RT Sbjct: 255 AMNESLRDIVSEVRQGTDTITTASHEIARGNLDLSNRT 292 >gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 74/215 (34%), Positives = 92/215 (42%), Gaps = 69/215 (32%) Query: 113 EEFAAGFNAGQATKLLNTEVAPLQSQWLEAIDKL--VKLEQGQIQRDLDD--FAQSGRRT 168 +E A G++TK T L+ IDKL V + I D +AQ+ R Sbjct: 142 DEEARNLQRGESTKAYRTS--------LQQIDKLAAVNDKGADISNKQADAIYAQA-RLW 192 Query: 169 TLATIAICAA-AMLLAVLVAWRLNRSITRPLNEAVRLASRVAARLPEAVRLASEFFMVLL 227 + T+A C AMLLAV V+ R I RPL EAV Sbjct: 193 IIVTVAACIGLAMLLAVWVS----RLIARPLEEAV------------------------- 223 Query: 228 IGILLSEYGLSREGVLIAGLLFFVVRPMAXRVAAGDLTAHITAGGRDETGQLLSALGSMN 287 +A RVA GDLT I G+DETGQLL AL SMN Sbjct: 224 --------------------------SVAQRVAGGDLTTRIEPAGKDETGQLLVALKSMN 257 Query: 288 QSLLQTVSEVRDGTQGIFRVSQQNAAGNTDLAART 322 SL+ V +VR GTQ I S + A+GN DL++RT Sbjct: 258 DSLVGIVGQVRMGTQTITTASTEIASGNLDLSSRT 292 >gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sensory transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 585 Score = 74.3 bits (181), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/155 (36%), Positives = 71/155 (45%), Gaps = 51/155 (32%) Query: 168 TTLATIAICAAAMLLAVLVAWRLNRSITRPLNEAVRLASRVAARLPEAVRLASEFFMVLL 227 T+ I A A++LAVL+AW L +ITRPL AV+L Sbjct: 191 TSTTLIGGGAIALMLAVLLAWWLANNITRPLALAVQL----------------------- 227 Query: 228 IGILLSEYGLSREGVLIAGLLFFVVRPMAXRVAAGDLTAHITAGGRDETGQLLSALGSMN 287 A RVA+GDLTA I RDETG LL AL MN Sbjct: 228 ----------------------------ARRVASGDLTARIEVRSRDETGALLGALKDMN 259 Query: 288 QSLLQTVSEVRDGTQGIFRVSQQNAAGNTDLAART 322 +SL++ VS VR GT+ I S + A GN DL++RT Sbjct: 260 ESLVRIVSGVRRGTEMIATASSEIATGNLDLSSRT 294 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.132 0.359 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 855,934 Number of extensions: 29933 Number of successful extensions: 241 Number of sequences better than 1.0e-08: 34 Number of HSP's gapped: 246 Number of HSP's successfully gapped: 37 Length of query: 362 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 276 Effective length of database: 1,212,660 Effective search space: 334694160 Effective search space used: 334694160 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)