BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0128.0032.p
         (255 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312587|ref|YP_003776679.1| acetyl-coenzyme A carboxylase c...   268   4e-73
gi|300312588|ref|YP_003776680.1| tryptophan synthase subunit alp...   169   1e-43

>gi|300312587|ref|YP_003776679.1| acetyl-coenzyme A carboxylase
           carboxyl transferase subunit beta [Herbaspirillum
           seropedicae SmR1]
          Length = 289

 Score =  268 bits (685), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 134/137 (97%), Positives = 136/137 (99%)

Query: 87  ALEQKVPFICITATGGARMQEGLLSLMQMAKTTSMLTKLSEKKLPFISVLTDPTMGGVSA 146
           ALEQKVPFICITATGGARMQEGLLSLMQMAKTT+MLTKLSEKKLPFISVLTDPTMGGVSA
Sbjct: 152 ALEQKVPFICITATGGARMQEGLLSLMQMAKTTAMLTKLSEKKLPFISVLTDPTMGGVSA 211

Query: 147 SFAFMGDVVMAEPKALIGFAGPRVIENTVREKLPEGFQRSEFLVTKGAIDMIVDRRKMRE 206
           SFAFMGDVVMAEPKALIGFAGPRVIENTVREKLPEGFQR+EFLVTKGAIDMIVDRRKMRE
Sbjct: 212 SFAFMGDVVMAEPKALIGFAGPRVIENTVREKLPEGFQRAEFLVTKGAIDMIVDRRKMRE 271

Query: 207 EIARLLALLQNQAAETV 223
           EIA LLALLQNQAAETV
Sbjct: 272 EIAHLLALLQNQAAETV 288


>gi|300312588|ref|YP_003776680.1| tryptophan synthase subunit alpha
           [Herbaspirillum seropedicae SmR1]
          Length = 265

 Score =  169 bits (429), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 79/100 (79%), Positives = 85/100 (85%)

Query: 1   MAEGPVIQRACERALKFNVSTRDVLGYVREFRQTNTTTPVVLMGYANPIERFGVDAFIAA 60
           MAEGPVIQRACERALKF +ST DVLGYVREFR+TNT TP+VLMGYANPIERFGVDAFIAA
Sbjct: 58  MAEGPVIQRACERALKFGISTHDVLGYVREFRKTNTHTPIVLMGYANPIERFGVDAFIAA 117

Query: 61  AKEAGVDGTIVVDYPPEECEEFSQXMALEQKVPFICITAT 100
           A EAGVDGTIVVDYPPEECEEF+Q M  +   P   +  T
Sbjct: 118 ASEAGVDGTIVVDYPPEECEEFAQKMQAKGMDPIFLLAPT 157


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 695,377
Number of extensions: 25060
Number of successful extensions: 78
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 2
Length of query: 255
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 172
Effective length of database: 1,226,865
Effective search space: 211020780
Effective search space used: 211020780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)