BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0128.0030.p
         (460 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312586|ref|YP_003776678.1| bifunctional folylpolyglutamate...   575   e-165

>gi|300312586|ref|YP_003776678.1| bifunctional folylpolyglutamate
           synthase/dihydrofolate synthase [Herbaspirillum
           seropedicae SmR1]
          Length = 437

 Score =  575 bits (1482), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 296/351 (84%), Positives = 312/351 (88%), Gaps = 12/351 (3%)

Query: 2   QAQAKPSTLAEWLTLLETRHSKSIDMGLERVGKVREQLDIRFDCPVITVAGTNGKGSTCA 61
           QA   P+TL EWL LLE RH K IDMGLERV +V+++LDI FDCPVI VAGTNGKGSTCA
Sbjct: 4   QASPTPTTLNEWLALLEQRHFKQIDMGLERVMQVKQKLDIHFDCPVIMVAGTNGKGSTCA 63

Query: 62  MLESILIRAGYRVGLYIKPHFLHFNERARVEGIPASDAALIAAFEAVEEKRGDISLTYFE 121
           MLESIL+RAGYRVGLY+KPHFLHFNERAR+ G  ASDA LIAAFEAVE +RGDISLTYFE
Sbjct: 64  MLESILLRAGYRVGLYMKPHFLHFNERARLSGDMASDAQLIAAFEAVEAQRGDISLTYFE 123

Query: 122 FTTLAIMKLLADAKMDVVILEVGLGGRLDAVNVIDSDVGIVTSIDIDHTEYLGTTREEIG 181
           FTTLAIMKLLADA+ DVVILEVGLGGRLDAVNVID+DV IVTSIDIDHTEYLG TREEIG
Sbjct: 124 FTTLAIMKLLADARQDVVILEVGLGGRLDAVNVIDADVAIVTSIDIDHTEYLGETREEIG 183

Query: 182 FEKAGIYRAGKTAICGDPMPPKSX------------LMGRDFNYQGDKQQWAYGGRAQRR 229
           FEKAGI+R GK A+CGDP+PPKS             LMGRDFNYQGDKQQWAYGGR  RR
Sbjct: 184 FEKAGIFRPGKVAVCGDPLPPKSLIAHAEKIGADLWLMGRDFNYQGDKQQWAYGGRGMRR 243

Query: 230 NSLAYPSLRGANQLLNASAALAALEALRDRLPIGAQEVRTGLATVELPGRFQVLPGQPLV 289
           NSLAYPSLRGANQLLNASAALAALEALR+ LP+GAQEVRTGLATVELPGRFQVLPGQPLV
Sbjct: 244 NSLAYPSLRGANQLLNASAALAALEALREVLPVGAQEVRTGLATVELPGRFQVLPGQPLV 303

Query: 290 ILDVAHNPHAAATLAQNLDNMGFHPYTYAVFGSMLDKDIEGVINHLKGKID 340
           ILDVAHNPHAAATLAQNLDNMGFHPYTYAVFGSMLDKDIEGVI HLK KID
Sbjct: 304 ILDVAHNPHAAATLAQNLDNMGFHPYTYAVFGSMLDKDIEGVIGHLKDKID 354



 Score =  148 bits (374), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 70/72 (97%), Positives = 70/72 (97%)

Query: 343 TGLATVELPGRFQVLPGQPLVILDVAHNPHAAATLAQNLDNMGFHPYTYAVFGSMLDKDI 402
           TGLATVELPGRFQVLPGQPLVILDVAHNPHAAATLAQNLDNMGFHPYTYAVFGSMLDKDI
Sbjct: 283 TGLATVELPGRFQVLPGQPLVILDVAHNPHAAATLAQNLDNMGFHPYTYAVFGSMLDKDI 342

Query: 403 EGVINHLKGKID 414
           EGVI HLK KID
Sbjct: 343 EGVIGHLKDKID 354


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,504,469
Number of extensions: 66688
Number of successful extensions: 198
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 2
Length of query: 460
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 372
Effective length of database: 1,203,190
Effective search space: 447586680
Effective search space used: 447586680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)