BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0128.0026.p
         (392 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312583|ref|YP_003776675.1| glutamine phosphoribosylpyropho...   738   0.0  

>gi|300312583|ref|YP_003776675.1| glutamine
           phosphoribosylpyrophosphate amidotransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 506

 Score =  738 bits (1905), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/392 (89%), Positives = 379/392 (96%)

Query: 1   MFKNDRRHLNTDSDTEVLVNVFAHELQQATTGYSLDPAAVFKAVAMVHKRVRGSYAVVAQ 60
           MFKNDRRH+NTDSDTEVL+NV AHE+QQATTGYSLDPAA+FKAVAMVHKRVRGSYAVVAQ
Sbjct: 115 MFKNDRRHINTDSDTEVLLNVLAHEIQQATTGYSLDPAALFKAVAMVHKRVRGSYAVVAQ 174

Query: 61  IAGYGLLGFRDPYGIRPMCLGFNETDKGSEYMLASESVALEGLGFRFLRDVMPGEAIFID 120
           IAGYGLLGFRDPYGIRPMCLGFNE+DKG EYM+ASESVALEG+GFRFLRDV PGEAIFID
Sbjct: 175 IAGYGLLGFRDPYGIRPMCLGFNESDKGVEYMMASESVALEGMGFRFLRDVNPGEAIFID 234

Query: 121 NDGKLYNQQCADNPTLNPCAFEFVYLARPDSVIDGASVYASRLKMGEYLAEKVRREIASG 180
           NDGKLYNQQCA+NP+LNPCAFE+VYLARPDS+IDGASVYA+RLKMGE+LA+K+R +   G
Sbjct: 235 NDGKLYNQQCAENPSLNPCAFEYVYLARPDSIIDGASVYATRLKMGEFLADKIRSQFKHG 294

Query: 181 EIDVVMPIPDSSRPAAMELALKLNLDYREGFIKNRYIGRTFIMPGQGLRKKSVRQKLNAI 240
           EIDVVMPIPDSSRPAAMELALKL ++YREGFIKNRYIGRTFIMPGQ LRKKSVRQKLNAI
Sbjct: 295 EIDVVMPIPDSSRPAAMELALKLGIEYREGFIKNRYIGRTFIMPGQALRKKSVRQKLNAI 354

Query: 241 GSEFKGKSVLLVDDSIVRGTTSREIVQMAREAGAKRVIFASAAPPVKFPNVYGIDMPTRD 300
           GSEFKGK+VLLVDDSIVRGTTSREIVQMARE+GAK VIFASAAPPVKFPNVYGIDMPTRD
Sbjct: 355 GSEFKGKNVLLVDDSIVRGTTSREIVQMARESGAKNVIFASAAPPVKFPNVYGIDMPTRD 414

Query: 301 ELIAYGRTDEEVCREITADALVYQDVEDLKRSISDINPALRNFEASCFDGNYITGDISRD 360
           ELIA+GR++EEVCREITADALVYQDVE LKR+ISD NPAL+ FEASCFDG+YITGDI+++
Sbjct: 415 ELIAFGRSEEEVCREITADALVYQDVEALKRAISDANPALKQFEASCFDGHYITGDITQE 474

Query: 361 YLDRIEFARKNPKPALEDAVRSQLNLNLARVD 392
           YLDRIE+ARKNPKPALEDAVRSQLNLNLARVD
Sbjct: 475 YLDRIEYARKNPKPALEDAVRSQLNLNLARVD 506


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,173,832
Number of extensions: 49121
Number of successful extensions: 126
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 305
Effective length of database: 1,207,925
Effective search space: 368417125
Effective search space used: 368417125
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)