BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0128.0024.p
         (170 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312581|ref|YP_003776673.1| Rossmann fold nucleotide-bindin...   301   2e-83

>gi|300312581|ref|YP_003776673.1| Rossmann fold nucleotide-binding
           protein [Herbaspirillum seropedicae SmR1]
          Length = 198

 Score =  301 bits (771), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 140/170 (82%), Positives = 158/170 (92%)

Query: 1   MVKDNIALVYGGGNVGLMGVIATEVMRLGGEATGVIPKALLDKELGHNGLTRLHIVKDMH 60
           MV +NIALVYGGGNVGLMG+IA+EVM+LGGEATGVIPKALLDKELGH+GLTRLHIVKDMH
Sbjct: 29  MVNNNIALVYGGGNVGLMGIIASEVMQLGGEATGVIPKALLDKELGHDGLTRLHIVKDMH 88

Query: 61  ERKAMMAELSDGFVAMPGGMGTLEELFEVLTWAQLGFHYKPIGLLNVDGFYDNLIAFIEH 120
           ERKAMMAELSDGFVAMPGGMGTLEELFEVLTWAQLGFHYKPI L NV+GFYDNLIAF++H
Sbjct: 89  ERKAMMAELSDGFVAMPGGMGTLEELFEVLTWAQLGFHYKPICLYNVNGFYDNLIAFVDH 148

Query: 121 LVSQRFLTAEQSLLMMHDADPASLVQRFKTYKPSYTNKWADHKAADKLLP 170
           LVSQRF++++QS LMMH+ADPA L+QRF+T+ P+Y  KWAD +A   LLP
Sbjct: 149 LVSQRFVSSDQSGLMMHEADPARLIQRFQTFTPTYKTKWADREAVANLLP 198


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.139    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 555,637
Number of extensions: 22248
Number of successful extensions: 47
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 1
Length of query: 170
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 91
Effective length of database: 1,245,805
Effective search space: 113368255
Effective search space used: 113368255
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)