BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0128.0019.p
         (319 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312577|ref|YP_003776669.1| heat shock protein [Herbaspiril...   221   5e-59
gi|300311285|ref|YP_003775377.1| heat shock HtpX protein [Herbas...   176   2e-45
gi|300312576|ref|YP_003776668.1| translation factor SUA5 [Herbas...    87   1e-18

>gi|300312577|ref|YP_003776669.1| heat shock protein [Herbaspirillum
           seropedicae SmR1]
          Length = 291

 Score =  221 bits (564), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 108/120 (90%), Positives = 115/120 (95%)

Query: 11  GLNLPMLLVFSIVVGFTGSIISLLMSKSMAKWSTGARVIDTPVNSTEVWLVNTVSKLAQR 70
           GLNLPMLLVFS+VVGFTGSIISLLMSK+MAKWSTGARVI TP+N TE WL+ TV KLAQR
Sbjct: 35  GLNLPMLLVFSLVVGFTGSIISLLMSKTMAKWSTGARVIQTPMNGTEAWLLQTVGKLAQR 94

Query: 71  AGIGMPEVAVYEGEPNAFATGAFRDSALVAVSTGLLQGMTKEEVEAVLGHEVAHIANGDM 130
           AGIGMPEVAVY+GEPNAFATGAFRDSALVAVSTGLLQGMT++EVEAVLGHEVAHIANGDM
Sbjct: 95  AGIGMPEVAVYDGEPNAFATGAFRDSALVAVSTGLLQGMTQDEVEAVLGHEVAHIANGDM 154


>gi|300311285|ref|YP_003775377.1| heat shock HtpX protein
           [Herbaspirillum seropedicae SmR1]
          Length = 292

 Score =  176 bits (447), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 88/120 (73%), Positives = 101/120 (84%)

Query: 11  GLNLPMLLVFSIVVGFTGSIISLLMSKSMAKWSTGARVIDTPVNSTEVWLVNTVSKLAQR 70
           GLN  MLLVF  ++GF GS ISL MSK++AKWSTGARVI+ P NSTE+WL+ TV  LA R
Sbjct: 35  GLNFGMLLVFCGLMGFGGSFISLFMSKTIAKWSTGARVIEQPQNSTELWLLQTVQNLAAR 94

Query: 71  AGIGMPEVAVYEGEPNAFATGAFRDSALVAVSTGLLQGMTKEEVEAVLGHEVAHIANGDM 130
           A + MPEVAVY+G PNAFATGA + ++LVAVSTGLLQGMTK+EVEAVL HEVAHIANGDM
Sbjct: 95  AQLPMPEVAVYDGPPNAFATGASKSNSLVAVSTGLLQGMTKDEVEAVLAHEVAHIANGDM 154


>gi|300312576|ref|YP_003776668.1| translation factor SUA5
           [Herbaspirillum seropedicae SmR1]
          Length = 211

 Score = 87.4 bits (215), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 42/49 (85%), Positives = 44/49 (89%)

Query: 271 IRDRLEKQIELVIDSGACSLEPTTVIDLTDDNEPVLVRQGRGDAAPFGL 319
           IR  LEKQI+LVIDSGACSLEPTTVIDLTDD +PVLVRQGRGDA  FGL
Sbjct: 160 IRSHLEKQIDLVIDSGACSLEPTTVIDLTDDEQPVLVRQGRGDAGIFGL 208


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.135    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 951,272
Number of extensions: 36990
Number of successful extensions: 130
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 3
Length of query: 319
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 234
Effective length of database: 1,217,395
Effective search space: 284870430
Effective search space used: 284870430
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)