BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0128.0017.p
         (318 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312574|ref|YP_003776666.1| tryptophanyl-tRNA synthetase [H...   374   e-105
gi|300310847|ref|YP_003774939.1| tryptophanyl-tRNA synthetase [H...   152   4e-38

>gi|300312574|ref|YP_003776666.1| tryptophanyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 399

 Score =  374 bits (959), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 178/202 (88%), Positives = 192/202 (95%)

Query: 117 KLNTQFQEQGNEEALEQAKAMLDDAQNLSMIDRERLFGYLEGSRKLILTEPQALLTEASR 176
           +L TQFQE+G++EALEQAKAMLDDAQNLSMIDRERLFGYLEGSRKLILTEPQA+LTEASR
Sbjct: 198 ELRTQFQEKGDDEALEQAKAMLDDAQNLSMIDRERLFGYLEGSRKLILTEPQAMLTEASR 257

Query: 177 LPGLDGAKMSKSYGNAIALREDKESVTKKVRTMPTDPQRVRRTDPGDPGKCPVWQFHKVY 236
           LPGLDGAKMSKSYGNAIALREDKESVTKKV+TMPTDPQRVRR+DPGDP KCPVWQFH+VY
Sbjct: 258 LPGLDGAKMSKSYGNAIALREDKESVTKKVKTMPTDPQRVRRSDPGDPDKCPVWQFHQVY 317

Query: 237 SDDAVRQWVEKGCRSAGIGCLECKQPVIDAILSEQQPMLERAQQYIDDPSLVRAIIADGC 296
           S   V++W  KGCRSAGIGCLECKQPVIDAIL EQQPMLERAQ Y+DDPSLVRAI+ADGC
Sbjct: 318 SSAEVKEWAAKGCRSAGIGCLECKQPVIDAILQEQQPMLERAQPYLDDPSLVRAIVADGC 377

Query: 297 DTARKLAQDTMRDVREAMGLGY 318
           + ARKLAQ+TMRDVREAMGLGY
Sbjct: 378 EKARKLAQETMRDVREAMGLGY 399



 Score =  254 bits (650), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 117/118 (99%), Positives = 118/118 (100%)

Query: 1   MYPDRVVSGMRPTGALHLGHYHGALKNWVKLQSELPCLFFVADWHALTTHYDDPSVIETS 60
           MYPDRVVSGMRPTGALHLGHYHGALKNWVKLQSELPCLFFVADWHALTTHYDDPSVIETS
Sbjct: 1   MYPDRVVSGMRPTGALHLGHYHGALKNWVKLQSELPCLFFVADWHALTTHYDDPSVIETS 60

Query: 61  TWEMVIDWLAAGVDPSQSTLFIQSRVPEHAELHLLLSMATPLGWLERVPTYKDQQEKL 118
           TWEMVIDWLAAGVDP+QSTLFIQSRVPEHAELHLLLSMATPLGWLERVPTYKDQQEKL
Sbjct: 61  TWEMVIDWLAAGVDPAQSTLFIQSRVPEHAELHLLLSMATPLGWLERVPTYKDQQEKL 118


>gi|300310847|ref|YP_003774939.1| tryptophanyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 344

 Score =  152 bits (383), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 114/343 (33%), Positives = 170/343 (49%), Gaps = 46/343 (13%)

Query: 6   VVSGMRPTGALHLGHYHGALKNWVKLQSELPCLFFVADWHALTTHYDDPSVIETSTWEMV 65
           V++G RPTG LHLGHY G+LK+ V LQ        +AD  A+T +      +  +  E+ 
Sbjct: 16  VLTGDRPTGPLHLGHYIGSLKSRVALQETSRQFLLLADTQAMTDNVGRHQKVTDNVLEVA 75

Query: 66  IDWLAAGVDPSQSTLFIQSRVPEHAELHLLLSMATPLGWLERVPTYKDQ----------- 114
           +D+LA G+DP +ST+FIQS+V E  EL ++L     +  LER PT K++           
Sbjct: 76  LDYLAVGIDPEKSTIFIQSQVRELYELSMVLLNLVTVSRLERNPTIKEEIRLRGFERDIP 135

Query: 115 ---------QEKLNTQFQEQ----GNEE--ALEQAKAMLDDAQNLSMIDRERLFGYLEGS 159
                    Q    T F+ Q    G+++   +EQ   ++      + +DRE         
Sbjct: 136 AGFLTYPVSQAADITAFKGQLVPVGSDQLPMIEQTNELVRKFN--ATVDRE--------- 184

Query: 160 RKLILTEPQALLTEASRLPGLDG-AKMSKSYGNAIALREDKESVTKKVRTMPTDPQRVRR 218
              +L E + +L+E  RLPG+DG AKMSKS GN+IAL      + + V  M TDP  +R 
Sbjct: 185 ---VLVECKEVLSETGRLPGIDGKAKMSKSLGNSIALGATPAEIKQAVHRMYTDPNHLRV 241

Query: 219 TDPGDPGKCPVWQFHKVY--SDDAVRQWVEKGCRSAGIGCLECKQPVIDAILSEQ-QPML 275
            DPG      V+ F   +    DAV +      R  G+G    K+  ++ IL E  +P+ 
Sbjct: 242 DDPGQVEGNVVFTFLDAFDPDRDAVAELKAHYTR-GGLGDSVVKRR-LEGILQEMLEPIR 299

Query: 276 ERAQQYIDDPSLVRAIIADGCDTARKLAQDTMRDVREAMGLGY 318
            R +++  D   V AI+  G + A  +A  TM +V  A+GL Y
Sbjct: 300 TRREEFAKDRGEVLAILKRGTERASAVAAQTMSEVNAALGLNY 342


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,057,005
Number of extensions: 42314
Number of successful extensions: 149
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 3
Length of query: 318
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 233
Effective length of database: 1,217,395
Effective search space: 283653035
Effective search space used: 283653035
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)