BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0128.0015.p
         (391 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312572|ref|YP_003776664.1| transmembrane lipoprotein [Herb...   626   0.0  

>gi|300312572|ref|YP_003776664.1| transmembrane lipoprotein
           [Herbaspirillum seropedicae SmR1]
          Length = 393

 Score =  626 bits (1615), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/393 (80%), Positives = 349/393 (88%), Gaps = 2/393 (0%)

Query: 1   MTIRKNVHSASRLLPQRGLTGLMIALAFTSLAGCSAVSNMLEGDRIDYKSAEKAKGPRLE 60
           MT  KNV    R         +++ALA   LAGCS+V N+L+GDRIDYKSAEKA+GPRLE
Sbjct: 1   MTNSKNVRPVVRSAATLTQRSIVVALALAGLAGCSSVGNLLDGDRIDYKSAEKARGPRLE 60

Query: 61  VPPDLTQLQRDNRYAIPESNKGVATASGYSLEQKTRPVTDAAAVAPQAKGD-LRIERDGT 119
           VPPDLTQLQRDNRYAIPE+NKGVATASGY LEQ+TRP  +  +VAP AKGD +RIERDG+
Sbjct: 61  VPPDLTQLQRDNRYAIPEANKGVATASGYQLEQQTRPANEITSVAPAAKGDEIRIERDGS 120

Query: 120 QRWLVVSQTPEQLWGPIKDFWQDSGFLINVESQDTGVMETDWAENRAKIPQDFIRNTLGR 179
           QRWLVV QTPEQLW  IKDFWQDSGFLIN+ES DTGVMETDWAENRAKIPQDF+RNTLG+
Sbjct: 121 QRWLVVKQTPEQLWPQIKDFWQDSGFLINIESPDTGVMETDWAENRAKIPQDFVRNTLGK 180

Query: 180 VFDSLYSTGERDKFRTRLERGPNGTTEIFISHRGAEEVLTGSAKETSVWTARPSDPGLEA 239
           VFDSLYSTGERDKFRTRLERGPNGTTEIFISHRGAEEVLTGSAKETSVWTARPSDPGLEA
Sbjct: 181 VFDSLYSTGERDKFRTRLERGPNGTTEIFISHRGAEEVLTGSAKETSVWTARPSDPGLEA 240

Query: 240 EFLARLMVRLGAEETKAKAAVANAPTLQARSKLLKSANGSSVQVDESFDRAWRRVGLALD 299
           EFL+RLMVRLGAEETKAKAAVANAP+LQARS+L K+A G+SVQVDE F+RAWRRVGLALD
Sbjct: 241 EFLSRLMVRLGAEETKAKAAVANAPSLQARSRLQKTAAGTSVQVDEGFERAWRRVGLALD 300

Query: 300 RVGFTVEDRDRTQGLYFVRYVDQNQDAKDKESEGFFSKLFSSKDKDKKAARYRIVVKATG 359
           RVGFTVEDRDR+QG+Y+VRYVDQNQDAKDK+ EGFFS++FSSKDKDKKAA+YRIVVK  G
Sbjct: 301 RVGFTVEDRDRSQGIYYVRYVDQNQDAKDKKDEGFFSRIFSSKDKDKKAAKYRIVVKGAG 360

Query: 360 -DISNITVQNNDGKQEVSQIADKILGLLNDQLK 391
            D SNI VQN +G  + S I+DKILGLLN+QLK
Sbjct: 361 SDSSNIVVQNGEGGPDTSGISDKILGLLNEQLK 393


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.131    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,128,347
Number of extensions: 43643
Number of successful extensions: 128
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 304
Effective length of database: 1,207,925
Effective search space: 367209200
Effective search space used: 367209200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 131 (55.1 bits)