BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0128.0010.p
         (311 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312568|ref|YP_003776660.1| transmembrane protein [Herbaspi...   328   4e-91

>gi|300312568|ref|YP_003776660.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 308

 Score =  328 bits (841), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 163/282 (57%), Positives = 205/282 (72%), Gaps = 3/282 (1%)

Query: 26  FSFGVIGHSFSGSPDEGVLRRALDESDADNLAFVVVNGIKSAAEPCSDALYTARRDLLKE 85
           FSFGVI H+ +G   E  LR+AL E+DADNLAFVVVNGIKS +E C D LY AR +LL +
Sbjct: 29  FSFGVINHAAAGK-GEDTLRQALAETDADNLAFVVVNGIKSPSESCDDTLYNARHELLSQ 87

Query: 86  AENGVIVSLAASDWVGCRNK-NGSVAIERLNRVRDLFFPDEFSFGASKVPLFRQSVTPKF 144
           A+NGV +SLA SDW+ CR++ N S AIERL R+R++F+  EFS GA+++P+ RQS+TPKF
Sbjct: 88  AQNGVFLSLAGSDWITCRDRENRSDAIERLARMREIFYSGEFSLGATRLPMLRQSLTPKF 147

Query: 145 RSYTENARWEFGNVLFATVNLPAANNHFLQDGGRNSEFEDRLIANKDWLQRVFTFAAQKK 204
           RSY EN RWE GNV+FATVNLPA NNHFL DGGRN+EFEDRLIAN++WLQ +F FAA KK
Sbjct: 148 RSYAENTRWEVGNVIFATVNLPAGNNHFLLDGGRNNEFEDRLIANRNWLQHLFAFAALKK 207

Query: 205 LAGIVLFADGNPLAQPSQRPFLLRGQRDGFAETRQRIVTLAAAFKGKILLVHGETLKDES 264
            A IV F+DGNP   P +R F  R QRDGFAETR+    L+  F G++L+VHG+  K ++
Sbjct: 208 SAAIVFFSDGNPFGPPPKRSF-FRAQRDGFAETRRLFSDLSGNFAGRVLVVHGQAPKPKT 266

Query: 265 NAGILWRRNLGSIGVASGWSKFTVDNSNAALFRLNDSSKAVR 306
            + ILW   LG++ V   W K  VD+    LF + D+    R
Sbjct: 267 PSHILWTGKLGNVAVGERWLKIVVDDHLPQLFAVADADGERR 308


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 904,024
Number of extensions: 36885
Number of successful extensions: 103
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 226
Effective length of database: 1,217,395
Effective search space: 275131270
Effective search space used: 275131270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)