BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0128.0009.p
         (346 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312567|ref|YP_003776659.1| DNA mismatch repair protein [He...   586   e-168

>gi|300312567|ref|YP_003776659.1| DNA mismatch repair protein
           [Herbaspirillum seropedicae SmR1]
          Length = 894

 Score =  586 bits (1510), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 290/351 (82%), Positives = 309/351 (88%), Gaps = 9/351 (2%)

Query: 1   LSREKFLYEQLLQDLSPHIVTLQAIAHALAQLDTLVALADHAARNNWCAPQLVTEPTIVI 60
           LSREKFLYEQLL D+  HIV LQAIAHALAQLDTLVALADHA RNNWCAPQLV EP I I
Sbjct: 540 LSREKFLYEQLLGDMGAHIVRLQAIAHALAQLDTLVALADHAVRNNWCAPQLVDEPCIQI 599

Query: 61  EQGRHPVVENQIERFIANDCAFTSERKLLLITGPNMGGKSTFMRQVALITLLAYVGSFVP 120
           EQGRHPVVENQIERFIANDC   +ER+LLLITGPNMGGKS FMRQVALITLLAYVGSFVP
Sbjct: 600 EQGRHPVVENQIERFIANDCQLAAERRLLLITGPNMGGKSIFMRQVALITLLAYVGSFVP 659

Query: 121 ATSATIGPIDRIFTRIGAADDLAGGRSTFMVEMTESASILNNATENSLVLMDEVGRGTST 180
           ATSA IGP+DRIFTRIGAADDLAGGRSTFMVEMTESA+ILNNATE+SLVLMDEVGRGTST
Sbjct: 660 ATSAVIGPVDRIFTRIGAADDLAGGRSTFMVEMTESAAILNNATEHSLVLMDEVGRGTST 719

Query: 181 FDGLALAWAIAKHLIDATRSFTLFATHYFELTQLPEVHPTASNVHLSAVEHKDSIVFLHA 240
           FDGLALAWAIAKHLID TRSFTLFATHYFELTQLPE+HPTA+NVHLSAVEHKDSIVFLHA
Sbjct: 720 FDGLALAWAIAKHLIDVTRSFTLFATHYFELTQLPEIHPTAANVHLSAVEHKDSIVFLHA 779

Query: 241 VQAGPASQSYGLQVAQLAGVPTPVIRAARKHLAALETQSVQTTPQFDLFSTP----PRAD 296
           VQ+GPASQSYGLQVAQLAGVP  VIRAARKHL+ALE+QS+Q TPQFDLFS P    P   
Sbjct: 780 VQSGPASQSYGLQVAQLAGVPAQVIRAARKHLSALESQSMQATPQFDLFSAPAFATPGTQ 839

Query: 297 D-----DDAHTTPSASADPVAQAVADALADIDPDALTPRQALDALYRLKQL 342
           D     D+   + +   DP+AQA+   LA IDPDALTPRQAL+ALY+LK L
Sbjct: 840 DEPDPADERSESDAVEPDPLAQALLQTLAQIDPDALTPRQALEALYQLKAL 890


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.132    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,045,093
Number of extensions: 41277
Number of successful extensions: 213
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 212
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 260
Effective length of database: 1,212,660
Effective search space: 315291600
Effective search space used: 315291600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)