BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0128.0004.p
         (166 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312561|ref|YP_003776653.1| xanthine/CO dehydrogenase matur...   203   6e-54

>gi|300312561|ref|YP_003776653.1| xanthine/CO dehydrogenase
           maturation protein [Herbaspirillum seropedicae SmR1]
          Length = 362

 Score =  203 bits (516), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 98/131 (74%), Positives = 110/131 (83%)

Query: 1   VLATLPCRVLWVDEREDMFPPDLPMQVTVEATDVPNAVVDMAEPGACFLVMTHSHALDQQ 60
           VL+TLPCRVLWVD RE+MFPP LP Q+  EATDVPNA VDMA+PGA FLVMTHSHALDQQ
Sbjct: 206 VLSTLPCRVLWVDAREEMFPPGLPPQIRTEATDVPNAAVDMADPGAYFLVMTHSHALDQQ 265

Query: 61  LSERILKRADIGWYGLIGSQTKRKQFEHRLLERGITQEQLNKMTCPIGIPGIYGKEPASI 120
           LSERILKR D+ W+GLIGS TKR+QFEHRL ERG +  QL ++TCPIGI GI GKEPASI
Sbjct: 266 LSERILKRQDVAWFGLIGSLTKRRQFEHRLAERGFSAAQLERITCPIGIDGIDGKEPASI 325

Query: 121 AIALPASRRRL 131
           AIA+ A   +L
Sbjct: 326 AIAVVAQLLQL 336


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.137    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 440,981
Number of extensions: 16507
Number of successful extensions: 50
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 88
Effective length of database: 1,250,540
Effective search space: 110047520
Effective search space used: 110047520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 127 (53.5 bits)