BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0127.0024.p (175 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbasp... 209 1e-55 gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A... 115 2e-27 gi|300310542|ref|YP_003774634.1| nitrate transporter ATPase [Her... 94 7e-21 gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase ... 86 1e-18 gi|300310818|ref|YP_003774910.1| nitrate/sulfonate/bicarbonate A... 85 3e-18 >gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 209 bits (531), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 107/147 (72%), Positives = 115/147 (78%), Gaps = 4/147 (2%) Query: 29 ELVALVGPSGCGKSTXSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRMTLQDALRT 88 E V L G SGGMRQR A+AR +L+DEPFGALDALTRMTLQDALR Sbjct: 115 ENVKLKGFEHYYPHQVSGGMRQRAALARAFISQPKALLLDEPFGALDALTRMTLQDALRD 174 Query: 89 LIRSEVQGKAPTVLLVTHDVDEALFLADRILVFSARPATVLKEFNLVHHEKTHDLSEFSA 148 LIR + PTV+LVTHDVDEALFLADRI VFS RPA VLKEFNLVHHEKTHDLSEF+A Sbjct: 175 LIRQQ----GPTVVLVTHDVDEALFLADRIFVFSPRPAKVLKEFNLVHHEKTHDLSEFAA 230 Query: 149 IRREILCLLGIHAEQDEFAKTIEGVGI 175 IRR+ILCLLGIHAEQDEFAK IEGVG+ Sbjct: 231 IRRDILCLLGIHAEQDEFAKNIEGVGV 257 Score = 70.9 bits (172), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 31/43 (72%), Positives = 36/43 (83%) Query: 1 MKLSFKNIQKSFSGLHVIDDFSRDIGQGELVALVGPSGCGKST 43 MKLSF N+ K F LHVI++F+R+I GELVALVGPSGCGKST Sbjct: 1 MKLSFNNVAKHFGDLHVIEEFTREIASGELVALVGPSGCGKST 43 >gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 115 bits (288), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 65/111 (58%), Positives = 83/111 (74%), Gaps = 7/111 (6%) Query: 45 SGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRMTLQDALRTLIRSEVQGKAPTVLLV 104 SGGMRQRVAIARVLALDSPIMLMDEPFGALDALTR LQD L I E + T++ V Sbjct: 142 SGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQDEL-LRIWDEFRK---TIVFV 197 Query: 105 THDVDEALFLADRILVFSARPATVLKEFNLVHHEKTHDLS--EFSAIRREI 153 TH ++EA++LADRI+V + RP TV ++ LV+ + D + EF+A++RE+ Sbjct: 198 THSIEEAIYLADRIVVMTYRPGTVKRDM-LVNLPRLRDPADPEFNALKREL 247 >gi|300310542|ref|YP_003774634.1| nitrate transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 272 Score = 93.6 bits (231), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 53/104 (50%), Positives = 69/104 (66%), Gaps = 7/104 (6%) Query: 31 VALVGPSGCGK---STXSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRMTLQDALR 87 +ALVG S + SGGM+QRV IAR LA++ ++LMDEPFGALDALTR LQD L Sbjct: 129 LALVGLSAAENKRPNEISGGMKQRVGIARALAMEPKVLLMDEPFGALDALTRAHLQDELL 188 Query: 88 TLIRSEVQGKAPTVLLVTHDVDEALFLADRILVFSARPATVLKE 131 + V TV++VTHDVDEA+ L+DRI++ + PA + E Sbjct: 189 KI----VAKTDSTVVMVTHDVDEAVLLSDRIVMMTNGPAATIGE 228 >gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 86.3 bits (212), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 56/140 (40%), Positives = 82/140 (58%), Gaps = 16/140 (11%) Query: 3 LSFKNIQKS------FSGLHVIDDFSRDIGQGELVALVGPSGCGKSTX---SGGMRQRVA 53 L +K++Q + F+G+ D SR+ Q EL+ LVG ++ SGGMRQRV Sbjct: 87 LPWKSVQDNVALGLKFAGVSKSD--SRERAQ-ELLRLVGLQDFARAAPYELSGGMRQRVG 143 Query: 54 IARVLALDSPIMLMDEPFGALDALTRMTLQDALRTLIRSEVQGKAPTVLLVTHDVDEALF 113 +AR LA + I+LMDEPFGALD++TR +Q+ L ++ GK V +TH ++EALF Sbjct: 144 LARALAPNPKILLMDEPFGALDSMTREQMQELLVSVWAR--TGK--QVFFITHSIEEALF 199 Query: 114 LADRILVFSARPATVLKEFN 133 L ++V S RP ++ F Sbjct: 200 LGTEVIVMSPRPGRIVARFE 219 >gi|300310818|ref|YP_003774910.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 265 Score = 85.1 bits (209), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 49/115 (42%), Positives = 67/115 (58%), Gaps = 10/115 (8%) Query: 45 SGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRMTLQDALRTLIRSEVQGKAPTVLLV 104 SGGMRQR IARVL + ++LMDEPFGALDA TR LQ L + +S T++ V Sbjct: 135 SGGMRQRAQIARVLVNEPSVVLMDEPFGALDAQTREVLQSELDRIWKS----TGCTIVFV 190 Query: 105 THDVDEALFLADRILVFSARPATVLKEFNLVHHEKTHDLSE------FSAIRREI 153 THD+ EA+ LADR++ +A P +K VH D ++ ++ IR +I Sbjct: 191 THDIWEAILLADRVVTMTAGPRAHIKTIEEVHLPHPRDPADPACMALYARIRDDI 245 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.138 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 521,063 Number of extensions: 20696 Number of successful extensions: 442 Number of sequences better than 1.0e-08: 35 Number of HSP's gapped: 443 Number of HSP's successfully gapped: 36 Length of query: 175 Length of database: 1,619,870 Length adjustment: 79 Effective length of query: 96 Effective length of database: 1,245,805 Effective search space: 119597280 Effective search space used: 119597280 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 127 (53.5 bits)