BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0127.0021.p (420 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312624|ref|YP_003776716.1| acetylornithine aminotransferas... 435 e-123 gi|300312623|ref|YP_003776715.1| chaperone activity ATPase [Herb... 197 2e-51 gi|300310415|ref|YP_003774507.1| 4-aminobutyrate aminotransferas... 137 1e-33 gi|300311765|ref|YP_003775857.1| adenosylmethionine-8-amino-7-ox... 117 2e-27 gi|300312816|ref|YP_003776908.1| aminotransferase class III prot... 116 4e-27 >gi|300312624|ref|YP_003776716.1| acetylornithine aminotransferase [Herbaspirillum seropedicae SmR1] Length = 400 Score = 435 bits (1119), Expect = e-123, Method: Compositional matrix adjust. Identities = 212/267 (79%), Positives = 229/267 (85%), Gaps = 1/267 (0%) Query: 97 YSMANAPHKDEHLTLXPEIVFTEGSGMWMTDHTGKRYLDYLQGWAVNALGHAPQCISDAL 156 YS ++A +K ++T PE+VFTEG GMW+TDH GKRYLDYLQGWAVN LGHAPQCI+DAL Sbjct: 3 YSQSDA-NKLMYVTNRPELVFTEGHGMWLTDHNGKRYLDYLQGWAVNTLGHAPQCIADAL 61 Query: 157 VAQGKKLINPSPAFYNAPSIELANLLTENSVFDRVFFTNSGAEANEGAFKLARKWGKLNK 216 AQ KKLINPSPAFYN PSIELA LLT NSVFDRVFF NSG EANEGA KLARKWGK N Sbjct: 62 AAQSKKLINPSPAFYNEPSIELAKLLTANSVFDRVFFANSGGEANEGAIKLARKWGKKNP 121 Query: 217 NSAGEDRFEIITFNHSFHGRTIATMSASGKPGWDTMFAPQVPGFQKAELNDLASVERLIS 276 + G RFEIITF HSFHGRT+ATMSASGK GWDTMFAPQVPGF KA LNDL SV+ LI Sbjct: 122 AADGSARFEIITFKHSFHGRTLATMSASGKDGWDTMFAPQVPGFPKAVLNDLESVKALIG 181 Query: 277 KKTVAVMLEPVQGEGGVIPATREFMQGLRRLTKNANLLLIVDEVQTGVGRTGELFGYQLS 336 + TVAVMLEPVQGEGGVIPA++EFMQGLR LTK NLLLIVDEVQ+G+GRTG+LF YQ S Sbjct: 182 EHTVAVMLEPVQGEGGVIPASKEFMQGLRSLTKEKNLLLIVDEVQSGMGRTGQLFAYQHS 241 Query: 337 DIEPDIMTLGKGIGGGVPLAALLAREE 363 IEPDIMTL KGIGGGVPLAALLAREE Sbjct: 242 GIEPDIMTLAKGIGGGVPLAALLAREE 268 >gi|300312623|ref|YP_003776715.1| chaperone activity ATPase [Herbaspirillum seropedicae SmR1] Length = 349 Score = 197 bits (500), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 91/111 (81%), Positives = 101/111 (90%) Query: 1 VTHGPHQERALSAQDESLGFSLFCCARPNSDVIIEAREVAGIGDFPVKKMPVRVAKLDKV 60 V HGPHQERALSA ++ LG +LFC A+P SDV IEAREVAG GD PV+K+PVRVAKLDKV Sbjct: 54 VEHGPHQERALSAHEQQLGMALFCVAKPQSDVTIEAREVAGAGDIPVRKLPVRVAKLDKV 113 Query: 61 ADDVIILSLQLPANDRLQYKAGQYVEFMLRDGKRRSYSMANAPHKDEHLTL 111 ADDVI+LSLQLPANDRLQYKAGQYVEF+LRDGKRRSYSMA APHKDEH++L Sbjct: 114 ADDVIVLSLQLPANDRLQYKAGQYVEFLLRDGKRRSYSMATAPHKDEHMSL 164 >gi|300310415|ref|YP_003774507.1| 4-aminobutyrate aminotransferase [Herbaspirillum seropedicae SmR1] Length = 426 Score = 137 bits (346), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 98/264 (37%), Positives = 137/264 (51%), Gaps = 33/264 (12%) Query: 123 MWMTDHTGKRYLDYLQGWAVNALGHAPQCISDALVAQGKKLINPSPAFY-NAPSIELA-- 179 +W D G+R++D+ G AV GH + DA+ AQ K + + A +ELA Sbjct: 38 LW--DVEGRRFIDFAAGIAVLNTGHRHPKLLDAMRAQMDKFTHTAYQIVPYASYVELAER 95 Query: 180 -NLLTENSVFDRVFFTNSGAEANEGAFKLARKWGKLNKNSAGEDRFEIITFNHSFHGRTI 238 N LT + + F ++GAEA E A K+AR A R +I F FHGRT+ Sbjct: 96 INRLTPGNYPKKTAFFSTGAEAVENAIKIAR---------AHTGRPGVIAFAGGFHGRTM 146 Query: 239 ATMSASGK-----------PGWDTMFAPQVPGFQKAELND-LASVERLI-----SKKTVA 281 M+ +GK PG D AP D L +V+ L +K+ A Sbjct: 147 MGMALTGKVAPYKLGFGPFPG-DVFHAPYPSALHGITSEDALEAVKGLFKSDIEAKRVAA 205 Query: 282 VMLEPVQGEGGVIPATREFMQGLRRLTKNANLLLIVDEVQTGVGRTGELFGYQLSDIEPD 341 ++LEPVQGEGG A +FM+GLR L +LLI DEVQ+G GRTG+LF + D+ PD Sbjct: 206 IILEPVQGEGGFYAAPADFMRGLRALCDEHGILLIADEVQSGYGRTGKLFAMEHYDVLPD 265 Query: 342 IMTLGKGIGGGVPLAALLAREEXL 365 +MT+ K + GG+PL+A+ R E + Sbjct: 266 LMTMAKSLAGGMPLSAVNGRAEIM 289 >gi|300311765|ref|YP_003775857.1| adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Herbaspirillum seropedicae SmR1] Length = 448 Score = 117 bits (293), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 82/276 (29%), Positives = 129/276 (46%), Gaps = 30/276 (10%) Query: 113 PEIVFTEGSGMWMTDHTGKRYLDYLQGWAVNALGHAPQCISDALVAQGKKLINPSPA-FY 171 P I T G+W+ D G+RYLD + W VN GH I+ ALV Q +L + A F Sbjct: 31 PPIAITRAHGLWLHDSDGRRYLDAISSWWVNLFGHTNTRINAALVEQLGQLEHAMLAGFT 90 Query: 172 NAPSIELANLLT--ENSVFDRVFFTNSGAEANEGAFKLA-RKWGKLNKNSAGEDRFEIIT 228 + P + L+ L F+ + GA A E A K++ W +N D+ E I Sbjct: 91 HEPVVALSEQLAALTGQALGHCFYASDGASAVEIALKMSVHAW----RNGGQPDKNEFIC 146 Query: 229 FNHSFHGRTIATMSASGKP----GWDTMFAPQ-----------VPGFQKAEL--NDLASV 271 +HG T+ + + P ++++ P PG E+ L V Sbjct: 147 IAGGYHGETVGALGVTDTPLFRSAYESLLRPAHVAASPDARQAAPGESAEEVAARALDDV 206 Query: 272 ERLISKK---TVAVMLEP-VQGEGGVIPATREFMQGLRRLTKNANLLLIVDEVQTGVGRT 327 ER++ ++ A+++EP VQ G+ +++GLR L LI DE+ G GRT Sbjct: 207 ERILQQRQGRIAALIVEPLVQCAAGMAMHDPGYVRGLRSLCDRYGAHLIADEIAVGCGRT 266 Query: 328 GELFGYQLSDIEPDIMTLGKGIGGG-VPLAALLARE 362 G F + + + PD++ L KGI GG +PL+ +++ E Sbjct: 267 GSFFACEQAGVWPDLLCLSKGISGGYLPLSLVMSSE 302 >gi|300312816|ref|YP_003776908.1| aminotransferase class III protein [Herbaspirillum seropedicae SmR1] Length = 440 Score = 116 bits (290), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 82/271 (30%), Positives = 135/271 (49%), Gaps = 30/271 (11%) Query: 120 GSGMWMTDHTGKRYLDYLQGWAVNALGHAPQCISDALVAQGKKLINPSPAFYN-APSIEL 178 G GM + D GKRY+D G AV+ LGH + +A+ Q +L +F+ AP+ EL Sbjct: 19 GEGMELIDQDGKRYIDASGGAAVSCLGHGHPRVIEAIRKQVGELAYAHTSFFTTAPAEEL 78 Query: 179 ANLLTENS--VFDRVFFTNSGAEANEGAFKLARKWGKLNKNSAGEDRFEIITFNHSFHGR 236 A +L + + + V+F + G+EA E A KLAR++ R II S+HG Sbjct: 79 AAMLADAAPGSLNHVYFLSGGSEAVEAALKLARQY---YVEVGQPQRRHIIARRQSYHGN 135 Query: 237 TIATMSASGKPGWDTMFAPQV-------PGF---QKAE-LNDLASVERLISK-------- 277 T+ ++ G MF P + P + +A+ +D+ V+RL + Sbjct: 136 TLGALAIGGNAWRREMFMPMLIEAHHVSPCYAYRNRADGESDVQYVQRLADELEQKILSL 195 Query: 278 ---KTVAVMLEPVQG-EGGVIPATREFMQGLRRLTKNANLLLIVDEVQTGVGRTGELFGY 333 + +A + E V G G +P ++ + +R + +LLI+DEV +G+GRTG LF Sbjct: 196 GADQVIAFVAETVVGATAGAVPPVGDYFRKIRAVCDKYGVLLILDEVMSGMGRTGYLFAC 255 Query: 334 QLSDIEPDIMTLGKGIGGGV-PLAALLAREE 363 + + PDI+ + KG+G G P+ A++ + Sbjct: 256 EEDGVVPDIVVIAKGLGAGYQPIGAMICSDH 286 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.135 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,253,619 Number of extensions: 50233 Number of successful extensions: 169 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 155 Number of HSP's successfully gapped: 10 Length of query: 420 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 332 Effective length of database: 1,203,190 Effective search space: 399459080 Effective search space used: 399459080 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)