BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0127.0016.p
         (325 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312628|ref|YP_003776720.1| transmembrane protein [Herbaspi...   525   e-150

>gi|300312628|ref|YP_003776720.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 498

 Score =  525 bits (1352), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 256/289 (88%), Positives = 276/289 (95%)

Query: 1   MGLTCAIFIASDNPLKGFVSLFIGMFIASVGMGNPAGVPRFTFDNPDLLSGVSLVPLMVG 60
           +GLTCAIFIASDNPLKGFVSLF+GMFIAS+GMGNPAG PRFTFD PDLL GVSLVPLMVG
Sbjct: 151 LGLTCAIFIASDNPLKGFVSLFLGMFIASIGMGNPAGAPRFTFDQPDLLGGVSLVPLMVG 210

Query: 61  MFAMSEVLRYAVSKDRAMTIPDGKVGNVFKGMWALTVKYPKSILRGSVLGTLVGILPGAG 120
           MFAMSEVLR+AVS+D +M + + +VGNVFKGMW L +KYPKS+LRGSVLGTLVG LPGAG
Sbjct: 211 MFAMSEVLRFAVSRDFSMKVAESRVGNVFKGMWGLMIKYPKSVLRGSVLGTLVGALPGAG 270

Query: 121 ADIAAWMSYAMSKKMSKEPEKFGTGHPEGIVESGAANNSALAGAWIPALVFGIPGDSITA 180
           ADIAAWMSYAMSKK+SKEPEKFGTGHPEGIVESGAANNSALAGAWIPALVFGIPGDSITA
Sbjct: 271 ADIAAWMSYAMSKKLSKEPEKFGTGHPEGIVESGAANNSALAGAWIPALVFGIPGDSITA 330

Query: 181 IVIGVLYMKNLSPGPMIFVENPVSMYAIFIVFILANLLMLPLGYWCIKVSKRILGVPRNL 240
           IVIGVLYMKNL+PGPMIFVENPVSMYAIFIVFILANLLMLPLG+WCIK++KRIL +PR +
Sbjct: 331 IVIGVLYMKNLNPGPMIFVENPVSMYAIFIVFILANLLMLPLGFWCIKMAKRILSIPRGI 390

Query: 241 LMPLILLFCIVGSYATNNSVSDVGIMLVFGLLAYLMEENGFPVAPAVRG 289
           LMPLILLFCIVGSYATNNSV+DVGIMLVFGLLAY+MEENGFPVAPAV G
Sbjct: 391 LMPLILLFCIVGSYATNNSVTDVGIMLVFGLLAYVMEENGFPVAPAVLG 439


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.141    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 943,047
Number of extensions: 39902
Number of successful extensions: 159
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 240
Effective length of database: 1,217,395
Effective search space: 292174800
Effective search space used: 292174800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)