BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0127.0011.p (259 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [H... 486 e-139 gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC tra... 337 6e-94 gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [H... 327 6e-91 gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [H... 320 9e-89 gi|300312694|ref|YP_003776786.1| sugar ABC transporter ATPase [H... 302 2e-83 >gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 486 bits (1250), Expect = e-139, Method: Compositional matrix adjust. Identities = 235/258 (91%), Positives = 246/258 (95%) Query: 1 MASVQIRGIKKQFGSTQVIRGVDIDIADGEFAVLVGPSGCGKSTLLRMLAGLEEITEGEI 60 MASVQIR +KKQFGSTQ+IRGVDIDIADGEF VLVGPSGCGKSTLLRMLAGLEEIT GEI Sbjct: 1 MASVQIRAVKKQFGSTQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGEI 60 Query: 61 SIGGTVVNNVQPKDRDIAMVFQNYALYPHMTVNDNMAFSLMLAKKDKSFIQQQVKKAAEI 120 IGGTVVNNVQPKDRDIAMVFQNYALYPHMTV DNMAFSL LAKKDK+F+ ++VKKAA+I Sbjct: 61 LIGGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDKAFVDERVKKAADI 120 Query: 121 LGLTALLERYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEIKELH 180 LGL LL+RYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEIKELH Sbjct: 121 LGLNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEIKELH 180 Query: 181 QRLKTTSVYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLELYDRPANIFVAGFIGSPAMN 240 QRLKTTS+YVTHDQIEAMTMADQIVVMRDGLVEQRGRPL+LYD PAN+FVAGFIGSPAMN Sbjct: 181 QRLKTTSIYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLDLYDYPANLFVAGFIGSPAMN 240 Query: 241 FIPATLRRNADKAEVEFA 258 FIPATLRRNA AEVEFA Sbjct: 241 FIPATLRRNATGAEVEFA 258 >gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 364 Score = 337 bits (864), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 166/262 (63%), Positives = 203/262 (77%), Gaps = 6/262 (2%) Query: 1 MASVQIRGIKKQFGS----TQVIRGVDIDIADGEFAVLVGPSGCGKSTLLRMLAGLEEIT 56 MA++ ++ ++K +G+ VI G+D +IADGEF V+VGPSGCGKSTLLRM+AGLEEI+ Sbjct: 1 MAAIHLKQVRKTYGAGTKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEIS 60 Query: 57 EGEISIGGTVVNNVQPKDRDIAMVFQNYALYPHMTVNDNMAFSLMLAKKDKSFIQQQVKK 116 G+I IG VVN+++PK+RDIAMVFQNYALYPHMTV NMA+ L + KS I +V++ Sbjct: 61 SGQIVIGDRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDARVQR 120 Query: 117 AAEILGLTALLERYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEI 176 AA IL L ALLER PRQLSGGQRQRVAMGRAIVR P VFLFDEPLSNLDAKLRVQMR EI Sbjct: 121 AAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI 180 Query: 177 KELHQRLKTTSVYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLELYDRPANIFVAGFIGS 236 ++LH L+TTS+YVTHDQ+EAMT+ +++VM G+ EQ G P E+Y RPA FVA FIGS Sbjct: 181 QKLHASLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFIGS 240 Query: 237 PAMNFIPATLRRNADKAEVEFA 258 P MN + L +AD A E + Sbjct: 241 PPMNLLQGKL--SADGASFEVS 260 >gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 377 Score = 327 bits (838), Expect = 6e-91, Method: Compositional matrix adjust. Identities = 161/260 (61%), Positives = 199/260 (76%), Gaps = 2/260 (0%) Query: 1 MASVQIRGIKKQF-GSTQVIRGVDIDIADGEFAVLVGPSGCGKSTLLRMLAGLEEITEGE 59 MA V I+ ++K + G V+ G+++DI DGEF VLVGPSGCGKSTLLRML GLEEI+ GE Sbjct: 1 MAHVNIKQLRKTYDGRADVLAGLNLDIRDGEFCVLVGPSGCGKSTLLRMLCGLEEISGGE 60 Query: 60 ISIGGTVVNNVQPKDRDIAMVFQNYALYPHMTVNDNMAFSLMLAKKDKSFIQQQVKKAAE 119 ++IGG VVN++ P +R IAMVFQ+YALYPHM V NMAF L +A KS I +++ AA Sbjct: 61 LAIGGQVVNHLPPAERGIAMVFQSYALYPHMNVYKNMAFGLKVAGNSKSDIDARIRHAAA 120 Query: 120 ILGLTALLERYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEIKEL 179 IL + LL+R PR+LSGGQRQRVA+GRAIVR P++FLFDEPLSNLDA LRVQ R EI +L Sbjct: 121 ILKIDHLLQRLPRELSGGQRQRVAIGRAIVRQPRLFLFDEPLSNLDAALRVQTRLEIAKL 180 Query: 180 HQRLKTTSVYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLELYDRPANIFVAGFIGSPAM 239 H++L T VYVTHDQ+EAMT+ D+IVVM +G ++Q G PLELY +P N+FVAGFIGSP M Sbjct: 181 HRQLAATIVYVTHDQVEAMTLGDKIVVMHEGRIQQAGTPLELYQQPQNLFVAGFIGSPKM 240 Query: 240 NFIPATLRRNADKA-EVEFA 258 NF + R D +VE A Sbjct: 241 NFFQGVVTRCDDSGVQVEIA 260 >gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 372 Score = 320 bits (819), Expect = 9e-89, Method: Compositional matrix adjust. Identities = 156/258 (60%), Positives = 195/258 (75%), Gaps = 1/258 (0%) Query: 1 MASVQIRGIKKQFGSTQVIRGVDIDIADGEFAVLVGPSGCGKSTLLRMLAGLEEITEGEI 60 MA+V IR + K++ +V+R ++++I DGEF V VGPSGCGKSTLLRM+AGLEEI++G++ Sbjct: 1 MAAVSIRNLAKRYDDNEVMRDINLEIEDGEFVVFVGPSGCGKSTLLRMIAGLEEISDGDL 60 Query: 61 SIGGTVVNNVQPKDRDIAMVFQNYALYPHMTVNDNMAFSLMLAKKDKSFIQQQVKKAAEI 120 IG +N V R +AMVFQ+YALYPHM++ DNMAF L +A K K+ I V+ AA+I Sbjct: 61 DIGARRMNEVPASKRGVAMVFQSYALYPHMSLYDNMAFGLKIAGKSKAEIDAAVQHAAKI 120 Query: 121 LGLTALLERYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEIKELH 180 L + LL+R PR LSGGQRQRVA+GRAI R P VFLFDEPLSNLDA LRV+MR E +LH Sbjct: 121 LHIDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEFAKLH 180 Query: 181 QRLKTTSVYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLELYDRPANIFVAGFIGSPAMN 240 LKTT +YVTHDQIEAMT+AD+IVV+ +G +EQ G P +LY PAN FVAGFIGSP MN Sbjct: 181 DDLKTTMIYVTHDQIEAMTLADKIVVLSEGRIEQVGSPQQLYHHPANRFVAGFIGSPKMN 240 Query: 241 FIPATLRR-NADKAEVEF 257 FI T+ AD +V+ Sbjct: 241 FIDGTVAAIQADGVQVQL 258 >gi|300312694|ref|YP_003776786.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 406 Score = 302 bits (773), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 148/259 (57%), Positives = 200/259 (77%), Gaps = 1/259 (0%) Query: 1 MASVQIRGIKKQF-GSTQVIRGVDIDIADGEFAVLVGPSGCGKSTLLRMLAGLEEITEGE 59 MA + + + K + G V+ +D+ I DGEF VL+GPSGCGKST+LRM+AGLE+I+ G Sbjct: 1 MADIHCQALAKHYAGGPPVLHPLDLHIGDGEFVVLLGPSGCGKSTMLRMIAGLEDISGGT 60 Query: 60 ISIGGTVVNNVQPKDRDIAMVFQNYALYPHMTVNDNMAFSLMLAKKDKSFIQQQVKKAAE 119 + IGGTVVN++ ++R++AMVFQNYALYPHM+V DN+AF L K+ + I ++V++ A Sbjct: 61 LRIGGTVVNDLPARERNVAMVFQNYALYPHMSVYDNIAFGLRRLKRPAAEIDRRVREVAA 120 Query: 120 ILGLTALLERYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEIKEL 179 +L L ALLER PR +SGGQ+QR A+ RAI++ P VFLFDEPLSNLDAKLR Q+R +IK L Sbjct: 121 LLNLEALLERKPRAMSGGQQQRAAIARAIIKTPSVFLFDEPLSNLDAKLRAQLRGDIKRL 180 Query: 180 HQRLKTTSVYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLELYDRPANIFVAGFIGSPAM 239 HQRL+TT+VYVTHDQ+EAMT+AD++++M+DG + Q G P ELY P N+F AGFIG+PAM Sbjct: 181 HQRLRTTTVYVTHDQLEAMTLADRVILMQDGRIVQAGSPAELYRYPRNLFAAGFIGTPAM 240 Query: 240 NFIPATLRRNADKAEVEFA 258 NF+ T++R + +E A Sbjct: 241 NFLSGTVQRQDGQLFIETA 259 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.137 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 686,468 Number of extensions: 25154 Number of successful extensions: 498 Number of sequences better than 1.0e-08: 131 Number of HSP's gapped: 299 Number of HSP's successfully gapped: 142 Length of query: 259 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 176 Effective length of database: 1,226,865 Effective search space: 215928240 Effective search space used: 215928240 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)