BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0127.0009.p
         (119 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [H...   171   2e-44

>gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 361

 Score =  171 bits (432), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 83/112 (74%), Positives = 95/112 (84%), Gaps = 1/112 (0%)

Query: 6   SPTXAEVEFADGTRLPAPYAHRGLDGVDGQRVVYGVRPEHLSIGPAGSGMSTKVVVVEPT 65
           + T AEVEFADGTR+PAPY    L G DGQ+V YGVRPEHLSIG AG G++TKV+VVEPT
Sbjct: 249 NATGAEVEFADGTRVPAPYGA-ALQGNDGQKVTYGVRPEHLSIGAAGQGIATKVIVVEPT 307

Query: 66  GADTEVYARFSDTSLTSIFRERHNFSAGDTITLVPEHGSTHLFDADSGKTLA 117
           GADTEV++RF DTSLTSIFRERH+F AGD I LVP+H  THLFDA+SGK+LA
Sbjct: 308 GADTEVFSRFGDTSLTSIFRERHDFGAGDVIHLVPDHSRTHLFDAESGKSLA 359


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.132    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 396,127
Number of extensions: 15601
Number of successful extensions: 41
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 1
Length of query: 119
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 45
Effective length of database: 1,269,480
Effective search space: 57126600
Effective search space used: 57126600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 124 (52.4 bits)