BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0127.0007.p (319 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312636|ref|YP_003776728.1| sugar ABC transporter permease ... 548 e-157 gi|300313088|ref|YP_003777180.1| sn-glycerol-3-phosphate ABC tra... 100 1e-22 gi|300309613|ref|YP_003773705.1| sugar ABC transporter permease ... 100 1e-22 gi|300312388|ref|YP_003776480.1| sugar ABC transporter permease ... 96 5e-21 gi|300309782|ref|YP_003773874.1| sugar ABC transporter permease ... 88 9e-19 >gi|300312636|ref|YP_003776728.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 299 Score = 548 bits (1413), Expect = e-157, Method: Compositional matrix adjust. Identities = 274/299 (91%), Positives = 290/299 (96%) Query: 21 MLSRLLNNRNVLGILFMAPAVLLLVVFLTYPLGLGVWLGFTDTKIGGEGSFIGLDNYSFL 80 MLSR LNNRNVLG+LFMAPAV+LLVVFLTYPLGLG+WLGFTDTKIGGEGSFIGLDN+++L Sbjct: 1 MLSRFLNNRNVLGMLFMAPAVILLVVFLTYPLGLGIWLGFTDTKIGGEGSFIGLDNFTYL 60 Query: 81 LGDSLAQLSLFNTLFYTITASILKFVLGLWLAILLNKNLPLKSFFRAIVLLPWIVPTALS 140 GDSLAQLSLFNT+FYT++ASILKF+LGLWLAILLNKN+PLK+FFRAIVLLPWIVPTALS Sbjct: 61 AGDSLAQLSLFNTVFYTVSASILKFMLGLWLAILLNKNVPLKTFFRAIVLLPWIVPTALS 120 Query: 141 ALAFWWMYDSQFSVISWGLMKMGLIDHYIDFLGDPWLARISTVVANVWRGIPFVAISLLA 200 ALAFWW+YD+QFSVISW L KMGLID YIDFLGDPW AR STV ANVWRGIPFVAISLLA Sbjct: 121 ALAFWWLYDAQFSVISWALHKMGLIDRYIDFLGDPWNARWSTVFANVWRGIPFVAISLLA 180 Query: 201 GLQTISPSLYEAAAIDGAKPWQQFRYVTLPLLTPIIAVVMTFSVLFTFTDFQLIYVLTRG 260 GLQTISPSLYEAAAIDGA PWQQFR+VTLPLLTPIIAVVMTFSVLFTFTDFQLIYVLTRG Sbjct: 181 GLQTISPSLYEAAAIDGATPWQQFRHVTLPLLTPIIAVVMTFSVLFTFTDFQLIYVLTRG 240 Query: 261 GPLNATHLMATLSFQRAIPGGSLGEGAALATYMIPFLLAAIMFSYFGLQRRGWQQGGDK 319 GPLNATHLMATLSFQRAIPGG+LGEGAALATYMIPFLLAAIMFSYFGLQRRGWQQGGDK Sbjct: 241 GPLNATHLMATLSFQRAIPGGALGEGAALATYMIPFLLAAIMFSYFGLQRRGWQQGGDK 299 >gi|300313088|ref|YP_003777180.1| sn-glycerol-3-phosphate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 294 Score = 100 bits (250), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 83/297 (27%), Positives = 135/297 (45%), Gaps = 23/297 (7%) Query: 21 MLSRLLNNRNVLGILFMAPAVLLLVVFLTYPLGLGVWLG-FTDTKIGGEGSFIGLDNYSF 79 M R L L +AP +++ ++F +P ++ GG F+ DN+ Sbjct: 1 MEKRARFTSKWLPYLLVAPQIIITLLFFFWPAVQALYQSMLLQDAFGGYSEFVWFDNFKT 60 Query: 80 LLGDSLAQLSLFNTLFYTITASILKFVLGLWLAILLNKNLPLKSFFRAIVLLPWIV-PTA 138 L GD S T ++ + L L LA+ ++ S ++ ++ P+ V P Sbjct: 61 LFGDPTYLESFRTTAIFSALVAFFGLALSLLLAVFADRVRRGASIYKTFLIWPYAVSPVV 120 Query: 139 LSALAFWWMYDSQFSVISWGLMKMGLIDHYIDFLGDPW-------LARISTVVANVWRGI 191 + L WM+ S +G++ H + +LG PW A I V+A +W+ I Sbjct: 121 VGVL---WMFLLSPS--------LGILSHVLSWLGLPWDYMINGTHAMILIVIAAIWKQI 169 Query: 192 PFVAISLLAGLQTISPSLYEAAAIDGAKPWQQFRYVTLPLLTPIIAVVMTFSVLFTFTD- 250 + + LAGLQ+I SL EAAAIDGA P ++F + PL++P + +V++ F D Sbjct: 170 SYNFLFFLAGLQSIPKSLIEAAAIDGAGPVKRFFTIVFPLISPTTFFLFVVNVVYAFFDT 229 Query: 251 FQLIYVLTRGGPLNATHLMATLSFQRAIPGGSLGEGAALATYMIPF--LLAAIMFSY 305 F ++ T GGP T ++ F GG LG AA + ++ LL + F Y Sbjct: 230 FVIVDATTHGGPGKDTEILVYKVFSDGFKGGDLGGSAAQSVVLMALVILLTVVQFKY 286 >gi|300309613|ref|YP_003773705.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 311 Score = 100 bits (249), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 73/269 (27%), Positives = 127/269 (47%), Gaps = 7/269 (2%) Query: 36 FMAPAVLLLVVFLTYPLGLGVWLGFTDTKIGGEGSFIGLDNYSFLLGDSLAQLSLFNTLF 95 F+APA ++ +V++ YP+ ++L F E F+GL NY L +L N + Sbjct: 41 FLAPACVMTLVYVLYPILYTIYLSFFSWDGMTEPRFVGLANYVELFHAPTFYTALKNNVL 100 Query: 96 YTITASILKFVLGLWLAILLNKNLPLKSFFRAIVLLPWIVPTALSALAFWWMYDSQFSVI 155 + + +L +GL +A+ LN+ + +++ P+++ + L + W YD F ++ Sbjct: 101 WLLM-FLLAPPMGLAIALYLNQKVIGMRVVKSLFFAPFVLSGVVVGLMYSWFYDPSFGLL 159 Query: 156 SWGLMKMGLIDHYIDFLGDPWLARISTVVANVWRGIPFVAISLLAGLQTISPSLYEAAAI 215 S L + LGD A + A +W + I L GL ++ EAA + Sbjct: 160 SL------LFGQGVPVLGDARYATFGIIFAALWPQTAYCMILFLTGLTALNHDQVEAARM 213 Query: 216 DGAKPWQQFRYVTLPLLTPIIAVVMTFSVLFTFTDFQLIYVLTRGGPLNATHLMATLSFQ 275 +GAK W RYV LP L + S++ F LI V+T GGP ++ ++A ++ Sbjct: 214 EGAKGWTMLRYVILPQLRSTTFMAFVVSIIGALRSFDLISVMTSGGPYESSTVLAYYAYD 273 Query: 276 RAIPGGSLGEGAALATYMIPFLLAAIMFS 304 +AI G AA+A + +L I++ Sbjct: 274 QAIKYYRQGYSAAVAVTLFAIMLVYIVYQ 302 >gi|300312388|ref|YP_003776480.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 291 Score = 95.5 bits (236), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 79/241 (32%), Positives = 124/241 (51%), Gaps = 3/241 (1%) Query: 30 NVLGILFMAPAVLLLVVFLTYPLGLGVWLGFTDTKIGGEGS-FIGLDNYSFLLGDSLAQL 88 +VL L ++PA++LL+ F YP +W F T G S F+GL+NY + D + Sbjct: 7 SVLPWLLLSPAMVLLIAFTHYPALATLWHSFFSTPKGVRPSVFVGLENYRLMADDPVFWQ 66 Query: 89 SLFNTLFYTITASILKFVLGLWLAILLNKNLPLKSFFRAIVLLPWIVPTALSALAFWWMY 148 +L N L++ + L L + +A+ +N+ L + R P ++P A + + Y Sbjct: 67 ALCNNLWFALGTIPLAIALAILMALWVNEKLAGRGVLRLAYFTPTVLPMIAVANIWLFFY 126 Query: 149 DSQFSVISWGLMKMGLIDHYIDFLGDPWLARISTVVANVWRGIPFVAISLLAGLQTISPS 208 Q+ ++ +GL H ++LG+P + +V VW+ F I LA LQ ISP Sbjct: 127 TPQYGLLEQITGALGLPSH--NWLGNPQTVLGALMVVAVWKEAGFFMIFYLAALQQISPV 184 Query: 209 LYEAAAIDGAKPWQQFRYVTLPLLTPIIAVVMTFSVLFTFTDFQLIYVLTRGGPLNATHL 268 L EAAA++GA WQ F V PLL P V+ +++ F I V+T+GGP NA+ L Sbjct: 185 LAEAAALEGASRWQYFWRVQFPLLMPTTLFVLINALINAFRLVDHIVVMTKGGPDNASSL 244 Query: 269 M 269 + Sbjct: 245 L 245 >gi|300309782|ref|YP_003773874.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 324 Score = 88.2 bits (217), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 68/235 (28%), Positives = 118/235 (50%), Gaps = 7/235 (2%) Query: 35 LFMAPAVLLLVVFLTYPLGLGVWLGFTDTKIGG--EGSFIGLDNYSFLLGDSLAQLSLFN 92 L P+VL+L+ ++ PL + ++ + + F+GL+NY+FLL D S+ N Sbjct: 42 LMQTPSVLILLAWMIVPLAMTIYFSVNRYNLMAPDQTGFVGLENYAFLLQDPAFWPSIGN 101 Query: 93 TLFYTITASILKFVLGLWLAILLNKNLPLKSFFRAIVLLPWIVPTALSALAFWWM-YDSQ 151 T + + + G LA+L ++ + R +V+ P+ V ++AL + M Sbjct: 102 TALLIGSVLAISVIGGTLLAVLFDQPFRGRGIARLLVIGPFFVMPTVAALIWKNMIMHPV 161 Query: 152 FSVISWGLMKMGLIDHYIDFLGDPWLARISTVVANVWRGIPFVAISLLAGLQTISPSLYE 211 + ++++ + +GL ID+L + +S ++ W+ IPF + LL LQ++ E Sbjct: 162 YGILAYVMRHLGL--EPIDWLAE--YPMLSVIIIVAWQWIPFAFLILLTALQSLDTDQKE 217 Query: 212 AAAIDGAKPWQQFRYVTLPLLTPIIAVVMTFSVLFTFTDFQLIYVLTRGGPLNAT 266 AA +DGA P + F Y+ LP L I VV+ +F + F I+ T GGP AT Sbjct: 218 AAQLDGAGPVRIFFYIVLPHLKRAITVVIMIETIFLLSVFAEIFTTTAGGPGTAT 272 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.329 0.144 0.457 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,028,283 Number of extensions: 43688 Number of successful extensions: 269 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 255 Number of HSP's successfully gapped: 11 Length of query: 319 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 234 Effective length of database: 1,217,395 Effective search space: 284870430 Effective search space used: 284870430 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)